Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i17
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    30   0.44 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   7.2  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    25   9.5  

>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
 Frame = -1

Query: 766 NYVIAEHILTHXQRGDIIICNDHNGKPMP------VKEAFKNDTFGYIRKPPDDNDWIVL 605
           NY  AE I+ + Q GD+I   D++   +P      + + FK+   G+    P  +  I  
Sbjct: 137 NYAFAEAIVKNLQDGDLIWVQDYHLMVLPQMLRELIGDKFKDIKIGFFLHTPFPSSEIYR 196

Query: 604 IIGGKNSLIQ---NCNV 563
           ++  +N +++   NC++
Sbjct: 197 VLPVRNEILEGVLNCDL 213


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 679  VKEAFKNDTFGYIRKPPDDNDWIV 608
            ++E FK+ T GY+  P D   W++
Sbjct: 2704 LRENFKSSTQGYVYTPRDLTRWLI 2727


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 620 IVIRRLPNIPKCIIFKCFFDWHRLSIVIIAND 715
           I +++LP +PK  I +  +D + LS+ I+ ++
Sbjct: 141 IFMKQLPKMPKEYITRLIYDRNHLSMTIVKDN 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,488
Number of Sequences: 5004
Number of extensions: 65636
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)