Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11i15
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 33 0.033
SPBC1711.14 |rec15||meiotic recombination protein Rec15|Schizosa... 33 0.057
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 28 1.2
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 1.2
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 28 1.6
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 27 2.9
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 2.9
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 3.8
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 26 6.6
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 26 6.6
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 26 6.6
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||... 26 6.6
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 8.7
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 25 8.7
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 8.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.7
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 33.5 bits (73), Expect = 0.033
Identities = 29/117 (24%), Positives = 50/117 (42%)
Frame = -1
Query: 688 PINENPQETYPDFMMTSSSEKDQSEQRSDCLGTLRAVQDLINQYDGMTDEDKSKMSGVRE 509
P+N N + + + D S D + + +QD++ D D+ + K V +
Sbjct: 165 PLNRNTSSRNTEMPLVRKDKPDFSNGHHDLIKQITELQDML---DKARDQARKKSRTV-D 220
Query: 508 YLESQVNFLQQRMSSYAISNVDSQNYLRYKRTIGMEPKQVKRLKKRNLSKFIRNFGK 338
LE +VN L ++ N+ Y K + Q+K LK +NL+ +NF K
Sbjct: 221 ILEGKVNELTHQL------NMADSKYNESKVANNSQNNQIKTLKAQNLN-IHKNFQK 270
>SPBC1711.14 |rec15||meiotic recombination protein
Rec15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 32.7 bits (71), Expect = 0.057
Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 2/141 (1%)
Frame = -1
Query: 631 EKDQSEQRSDCLGTLRAVQDLINQYDGMTDEDKSKMSGVREYLESQ-VNFLQQRMSSYAI 455
+K QS Q + CL + Q+++NQ G S++ L Q +N + M A+
Sbjct: 26 QKSQSNQIASCLAEMNTKQEVVNQTIGQLGRSISEVQQQNSQLVLQSLNQINMSMQQVAL 85
Query: 454 SNVDSQNYL-RYKRTIGMEPKQVKRLKKRNLSKFIRNFGKKHTKATTDCNEEAQVTDKAQ 278
D + + + ++T+ + + L+K S +TK DC +Q+T +
Sbjct: 86 GIQDYASRINKLEQTMSDMNLKFEALQKEQNS---------NTKTLADCT--SQMTIITK 134
Query: 277 RVNGKDVSKKLSDKKRRTKRN 215
+++ + + ++ K+ RT +N
Sbjct: 135 KLDAELKKRYMTTKQTRTVQN 155
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -1
Query: 403 EPKQVKRLKKRNLSKFIRNFGKKHTKATTDCNEEAQVTDKAQRVNGKDVSKKLSDKKRRT 224
EPK K L +N K N + HT NE TDK ++ + D + L +T
Sbjct: 58 EPKDNKPLDNKNDPKKTHNEDESHT------NESLPSTDKKKKKDNDDFKQNLKSSSNKT 111
Query: 223 K 221
+
Sbjct: 112 E 112
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 1.2
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Frame = -1
Query: 415 TIGMEPKQVKRLKKRNLSKFIRNFGKKHTKATT--DCNEEAQVTDKAQRV-NGKDVSKK- 248
TIG+ K+ KKRN + K++ +ATT D E+ T Q+V +DV +
Sbjct: 206 TIGVSSALSKKKKKRNRKNQKKKSTKQNIEATTENDALSESISTPDIQKVAQSEDVDAEQ 265
Query: 247 --LSDKKRRTKRNLRDIYYRALADAKK 173
++D K +R++ + A+AK+
Sbjct: 266 DTVADSKEEERRDIANDDLIVNANAKE 292
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = -1
Query: 712 LNEDTLGLPINENPQETYPDFMMTSSSEKDQSEQRSDCLGTLRAVQDLINQYDGMTDEDK 533
L D L ++P + D + +++ SE+ D R + +L+NQ DG + +D+
Sbjct: 266 LVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGD-REVQRTMLELLNQLDGFSSDDR 324
Query: 532 SKM 524
K+
Sbjct: 325 VKV 327
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 261 TCRRSCLTRSEERKEISGTFITGHWLTQKR*RRSEKSRTMERSAKCR 121
T RRS E E+ T HWL+ + RR ++ E + CR
Sbjct: 27 TSRRSATVSLERVHEL----FTEHWLSNLKNRREKRQELAEEAVYCR 69
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = -1
Query: 379 KKRNLSKFIRNFGKKHTKATTDCNEEAQVTDKAQRVNGKDVSKKLSDKKRRTKRNLRDIY 200
KK+ L K+I N KK A+ + D + + K++ K+ + K++ K L +
Sbjct: 88 KKKRLDKYIENKLKKEEVASLIAKLAEERIDTSLLSSSKNLGKQATAKEKLKKSLLEEKL 147
Query: 199 YRALADA 179
L+DA
Sbjct: 148 GLPLSDA 154
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -1
Query: 385 RLKKRNLSKFIRNFGKKHTKATTDCN----EEAQVTDKAQRVNGKDVSKKL 245
+LKK N + R F K A D + E Q ++ A +NG DV KKL
Sbjct: 60 QLKKWNATSVERRFQLKRVIAVRDSSIIAEEFPQESESATSLNGIDVLKKL 110
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 286 KAQRVNGKDVSKKLSDKKRRTKRNLRD 206
K ++ +GK+ SK+ KK++ K+ +D
Sbjct: 129 KVRKTSGKESSKREKSKKKKEKKEKKD 155
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/74 (18%), Positives = 34/74 (45%)
Frame = -1
Query: 589 LRAVQDLINQYDGMTDEDKSKMSGVREYLESQVNFLQQRMSSYAISNVDSQNYLRYKRTI 410
L+ ++ + +YD + E K+ + ++ V+ +QQ++ + I + L ++
Sbjct: 36 LKNIERRVKKYDQIESEYKTNIENEKKAFIKDVSQVQQKIKEFEIQKANQIKQLNEEKLS 95
Query: 409 GMEPKQVKRLKKRN 368
KQ ++ RN
Sbjct: 96 IEARKQQLEIEIRN 109
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 476 LLKKINLTF*VFPYARHLALIFVSHSIILVNQ 571
+L K+ +T + + L+ IFV SI LVNQ
Sbjct: 82 VLSKVLITHIISAFLSFLSAIFVFFSIFLVNQ 113
>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/70 (21%), Positives = 31/70 (44%)
Frame = -1
Query: 709 NEDTLGLPINENPQETYPDFMMTSSSEKDQSEQRSDCLGTLRAVQDLINQYDGMTDEDKS 530
NED L L + + Y + S S+QR + +++ ++ I + G+ +
Sbjct: 191 NEDYLSLNLGDGANTRYEQMALLESQTDTYSQQR---MSSIQNIESTITELGGIFSQLAQ 247
Query: 529 KMSGVREYLE 500
+S RE ++
Sbjct: 248 MVSEQRETVQ 257
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 304 EAQVTDKAQRVNGKDVSKKLSDKKRRTKRNLRDIYYRALADAK 176
EA + ++Q+ K++ + + K+R T +RDI + L DAK
Sbjct: 436 EACTSRESQKTRKKNLKENIR-KQRTTSTAIRDIAIKFLDDAK 477
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 8.7
Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Frame = -1
Query: 700 TLGLPINENPQETYPDFMMTSSSEKDQSEQRSDCLGTLRAVQDLINQYDGMTDEDKSKMS 521
T L ++E+P+E+ P+ + ++ + + + ++LINQ + D +
Sbjct: 241 TYHLYLDESPEESEPEKELKATFNQQNQDLYNQTEALKSTNEELINQIKSAEELDSAIQV 300
Query: 520 GVREYLESQVNFLQ-QRMSSYAISNVDSQNYLRYKRTIGMEPK--QVKRLK-KRNLSKF 356
Y Q + ++ Q S S ++S+ L + + +E K Q++ LK KR+ K+
Sbjct: 301 LEERYRTMQRDEVKFQSAMSGMKSKMESRTNLMKQLQVNIEEKESQLQLLKEKRDSLKY 359
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Frame = +3
Query: 45 CANKNVVLC---SKCQTNLATI 101
CANK + LC KC T LA I
Sbjct: 2414 CANKEIALCYGDQKCLTTLAEI 2435
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -1
Query: 547 TDEDKSKMSGVREYLESQVNFLQQRMSSYAIS 452
++E+++ YL ++ + +QQR++S AIS
Sbjct: 165 SNEEENTTLAFGSYLSTETSIIQQRVNSLAIS 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,369
Number of Sequences: 5004
Number of extensions: 59024
Number of successful extensions: 191
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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