Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11i15
(751 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X91257-1|CAA62635.1| 514|Homo sapiens seryl-tRNA synthetase pro... 32 1.9
D86970-1|BAA13206.2| 2067|Homo sapiens KIAA0216 protein. 32 1.9
D49914-1|BAA95602.1| 514|Homo sapiens Seryl tRNA Synthetase pro... 32 1.9
BC111398-1|AAI11399.1| 511|Homo sapiens SARS protein protein. 32 1.9
BC039612-1|AAH39612.1| 2002|Homo sapiens MYO18A protein protein. 32 1.9
BC009390-1|AAH09390.1| 514|Homo sapiens seryl-tRNA synthetase p... 32 1.9
BC000716-1|AAH00716.1| 514|Homo sapiens seryl-tRNA synthetase p... 32 1.9
AY703984-1|AAV80770.1| 1581|Homo sapiens SP-A receptor subunit S... 32 1.9
AL356389-5|CAI13600.1| 536|Homo sapiens seryl-tRNA synthetase p... 32 1.9
AL356389-4|CAI13599.1| 514|Homo sapiens seryl-tRNA synthetase p... 32 1.9
AK222677-1|BAD96397.1| 514|Homo sapiens seryl-tRNA synthetase v... 32 1.9
AB177860-1|BAD66838.1| 1715|Homo sapiens KIAA0216 splice variant... 32 1.9
AB177858-1|BAD66836.1| 2046|Homo sapiens KIAA0216 splice variant... 32 1.9
BC098580-1|AAH98580.1| 653|Homo sapiens Rho GTPase activating p... 32 2.5
AK091196-1|BAC03606.1| 748|Homo sapiens protein ( Homo sapiens ... 32 2.5
>X91257-1|CAA62635.1| 514|Homo sapiens seryl-tRNA synthetase
protein.
Length = 514
Score = 32.3 bits (70), Expect = 1.9
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -1
Query: 661 YPDFMMTSSSEKDQSEQR--SDCLGTLRAVQ-DLINQYDGMTDEDKSKMSGVREY-LESQ 494
+P +++ + D +R DC + DL+ DG E + ++G R Y L+
Sbjct: 140 HPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGV 199
Query: 493 VNFLQQRMSSYAISNVDSQNYL 428
+ FL+Q + YA+ + S+ Y+
Sbjct: 200 LVFLEQALIQYALRTLGSRGYI 221
>D86970-1|BAA13206.2| 2067|Homo sapiens KIAA0216 protein.
Length = 2067
Score = 32.3 bits (70), Expect = 1.9
Identities = 26/119 (21%), Positives = 57/119 (47%)
Frame = -1
Query: 589 LRAVQDLINQYDGMTDEDKSKMSGVREYLESQVNFLQQRMSSYAISNVDSQNYLRYKRTI 410
L + DL Q + +++K ++ + L+SQV FL+Q M ++ + + +
Sbjct: 1786 LAQINDLQAQLEE-ANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKIRELETRL 1844
Query: 409 GMEPKQVKRLKKRNLSKFIRNFGKKHTKATTDCNEEAQVTDKAQRVNGKDVSKKLSDKK 233
E QVKRL+ +L+ + K++ + T+ ++ + ++ K + ++L D K
Sbjct: 1845 EFERTQVKRLE--SLASRL----KENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1897
>D49914-1|BAA95602.1| 514|Homo sapiens Seryl tRNA Synthetase
protein.
Length = 514
Score = 32.3 bits (70), Expect = 1.9
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -1
Query: 661 YPDFMMTSSSEKDQSEQR--SDCLGTLRAVQ-DLINQYDGMTDEDKSKMSGVREY-LESQ 494
+P +++ + D +R DC + DL+ DG E + ++G R Y L+
Sbjct: 140 HPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGV 199
Query: 493 VNFLQQRMSSYAISNVDSQNYL 428
+ FL+Q + YA+ + S+ Y+
Sbjct: 200 LVFLEQALIQYALRTLGSRGYI 221
>BC111398-1|AAI11399.1| 511|Homo sapiens SARS protein protein.
Length = 511
Score = 32.3 bits (70), Expect = 1.9
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -1
Query: 661 YPDFMMTSSSEKDQSEQR--SDCLGTLRAVQ-DLINQYDGMTDEDKSKMSGVREY-LESQ 494
+P +++ + D +R DC + DL+ DG E + ++G R Y L+
Sbjct: 140 HPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGV 199
Query: 493 VNFLQQRMSSYAISNVDSQNYL 428
+ FL+Q + YA+ + S+ Y+
Sbjct: 200 LVFLEQALIQYALRTLGSRGYI 221
>BC039612-1|AAH39612.1| 2002|Homo sapiens MYO18A protein protein.
Length = 2002
Score = 32.3 bits (70), Expect = 1.9
Identities = 26/119 (21%), Positives = 57/119 (47%)
Frame = -1
Query: 589 LRAVQDLINQYDGMTDEDKSKMSGVREYLESQVNFLQQRMSSYAISNVDSQNYLRYKRTI 410
L + DL Q + +++K ++ + L+SQV FL+Q M ++ + + +
Sbjct: 1736 LAQINDLQAQLEE-ANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKIRELETRL 1794
Query: 409 GMEPKQVKRLKKRNLSKFIRNFGKKHTKATTDCNEEAQVTDKAQRVNGKDVSKKLSDKK 233
E QVKRL+ +L+ + K++ + T+ ++ + ++ K + ++L D K
Sbjct: 1795 EFERTQVKRLE--SLASRL----KENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1847
>BC009390-1|AAH09390.1| 514|Homo sapiens seryl-tRNA synthetase
protein.
Length = 514
Score = 32.3 bits (70), Expect = 1.9
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -1
Query: 661 YPDFMMTSSSEKDQSEQR--SDCLGTLRAVQ-DLINQYDGMTDEDKSKMSGVREY-LESQ 494
+P +++ + D +R DC + DL+ DG E + ++G R Y L+
Sbjct: 140 HPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGV 199
Query: 493 VNFLQQRMSSYAISNVDSQNYL 428
+ FL+Q + YA+ + S+ Y+
Sbjct: 200 LVFLEQALIQYALRTLGSRGYI 221
>BC000716-1|AAH00716.1| 514|Homo sapiens seryl-tRNA synthetase
protein.
Length = 514
Score = 32.3 bits (70), Expect = 1.9
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -1
Query: 661 YPDFMMTSSSEKDQSEQR--SDCLGTLRAVQ-DLINQYDGMTDEDKSKMSGVREY-LESQ 494
+P +++ + D +R DC + DL+ DG E + ++G R Y L+
Sbjct: 140 HPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGV 199
Query: 493 VNFLQQRMSSYAISNVDSQNYL 428
+ FL+Q + YA+ + S+ Y+
Sbjct: 200 LVFLEQALIQYALRTLGSRGYI 221
>AY703984-1|AAV80770.1| 1581|Homo sapiens SP-A receptor subunit
SP-R210 alphaS protein.
Length = 1581
Score = 32.3 bits (70), Expect = 1.9
Identities = 26/119 (21%), Positives = 57/119 (47%)
Frame = -1
Query: 589 LRAVQDLINQYDGMTDEDKSKMSGVREYLESQVNFLQQRMSSYAISNVDSQNYLRYKRTI 410
L + DL Q + +++K ++ + L+SQV FL+Q M ++ + + +
Sbjct: 1315 LAQINDLQAQLEE-ANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKIRELETRL 1373
Query: 409 GMEPKQVKRLKKRNLSKFIRNFGKKHTKATTDCNEEAQVTDKAQRVNGKDVSKKLSDKK 233
E QVKRL+ +L+ + K++ + T+ ++ + ++ K + ++L D K
Sbjct: 1374 EFERTQVKRLE--SLASRL----KENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1426
>AL356389-5|CAI13600.1| 536|Homo sapiens seryl-tRNA synthetase
protein.
Length = 536
Score = 32.3 bits (70), Expect = 1.9
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -1
Query: 661 YPDFMMTSSSEKDQSEQR--SDCLGTLRAVQ-DLINQYDGMTDEDKSKMSGVREY-LESQ 494
+P +++ + D +R DC + DL+ DG E + ++G R Y L+
Sbjct: 140 HPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGV 199
Query: 493 VNFLQQRMSSYAISNVDSQNYL 428
+ FL+Q + YA+ + S+ Y+
Sbjct: 200 LVFLEQALIQYALRTLGSRGYI 221
>AL356389-4|CAI13599.1| 514|Homo sapiens seryl-tRNA synthetase
protein.
Length = 514
Score = 32.3 bits (70), Expect = 1.9
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -1
Query: 661 YPDFMMTSSSEKDQSEQR--SDCLGTLRAVQ-DLINQYDGMTDEDKSKMSGVREY-LESQ 494
+P +++ + D +R DC + DL+ DG E + ++G R Y L+
Sbjct: 140 HPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGV 199
Query: 493 VNFLQQRMSSYAISNVDSQNYL 428
+ FL+Q + YA+ + S+ Y+
Sbjct: 200 LVFLEQALIQYALRTLGSRGYI 221
>AK222677-1|BAD96397.1| 514|Homo sapiens seryl-tRNA synthetase
variant protein.
Length = 514
Score = 32.3 bits (70), Expect = 1.9
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -1
Query: 661 YPDFMMTSSSEKDQSEQR--SDCLGTLRAVQ-DLINQYDGMTDEDKSKMSGVREY-LESQ 494
+P +++ + D +R DC + DL+ DG E + ++G R Y L+
Sbjct: 140 HPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGV 199
Query: 493 VNFLQQRMSSYAISNVDSQNYL 428
+ FL+Q + YA+ + S+ Y+
Sbjct: 200 LVFLEQALIQYALRTLGSRGYI 221
>AB177860-1|BAD66838.1| 1715|Homo sapiens KIAA0216 splice variant 2
protein.
Length = 1715
Score = 32.3 bits (70), Expect = 1.9
Identities = 26/119 (21%), Positives = 57/119 (47%)
Frame = -1
Query: 589 LRAVQDLINQYDGMTDEDKSKMSGVREYLESQVNFLQQRMSSYAISNVDSQNYLRYKRTI 410
L + DL Q + +++K ++ + L+SQV FL+Q M ++ + + +
Sbjct: 1449 LAQINDLQAQLEE-ANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKIRELETRL 1507
Query: 409 GMEPKQVKRLKKRNLSKFIRNFGKKHTKATTDCNEEAQVTDKAQRVNGKDVSKKLSDKK 233
E QVKRL+ +L+ + K++ + T+ ++ + ++ K + ++L D K
Sbjct: 1508 EFERTQVKRLE--SLASRL----KENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1560
>AB177858-1|BAD66836.1| 2046|Homo sapiens KIAA0216 splice variant 1
protein.
Length = 2046
Score = 32.3 bits (70), Expect = 1.9
Identities = 26/119 (21%), Positives = 57/119 (47%)
Frame = -1
Query: 589 LRAVQDLINQYDGMTDEDKSKMSGVREYLESQVNFLQQRMSSYAISNVDSQNYLRYKRTI 410
L + DL Q + +++K ++ + L+SQV FL+Q M ++ + + +
Sbjct: 1765 LAQINDLQAQLEE-ANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKIRELETRL 1823
Query: 409 GMEPKQVKRLKKRNLSKFIRNFGKKHTKATTDCNEEAQVTDKAQRVNGKDVSKKLSDKK 233
E QVKRL+ +L+ + K++ + T+ ++ + ++ K + ++L D K
Sbjct: 1824 EFERTQVKRLE--SLASRL----KENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTK 1876
>BC098580-1|AAH98580.1| 653|Homo sapiens Rho GTPase activating
protein 24 protein.
Length = 653
Score = 31.9 bits (69), Expect = 2.5
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = -1
Query: 736 NSDARRGFLNEDTLGLPINENPQETYPDFMMTSSSEKDQSEQRSDCLG---TLRAVQDLI 566
N R G LN DTLG P N P+ +T K Q EQ + LG L ++
Sbjct: 384 NGTVRMGILNSDTLGNPTNVRNMSWLPNGYVTLRDNK-QKEQAGE-LGQHNRLSTYDNVH 441
Query: 565 NQYDGMTDEDKSKM 524
Q+ M +DK +
Sbjct: 442 QQFSMMNLDDKQSI 455
>AK091196-1|BAC03606.1| 748|Homo sapiens protein ( Homo sapiens
cDNA FLJ33877 fis, clone CTONG2007072, weakly similar to
N-CHIMAERIN. ).
Length = 748
Score = 31.9 bits (69), Expect = 2.5
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = -1
Query: 736 NSDARRGFLNEDTLGLPINENPQETYPDFMMTSSSEKDQSEQRSDCLG---TLRAVQDLI 566
N R G LN DTLG P N P+ +T K Q EQ + LG L ++
Sbjct: 479 NGTVRMGILNSDTLGNPTNVRNMSWLPNGYVTLRDNK-QKEQAGE-LGQHNRLSTYDNVH 536
Query: 565 NQYDGMTDEDKSKM 524
Q+ M +DK +
Sbjct: 537 QQFSMMNLDDKQSI 550
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,444,637
Number of Sequences: 237096
Number of extensions: 1929666
Number of successful extensions: 4610
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4606
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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