Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i15
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.081
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.081
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 28.3 bits (60), Expect = 0.081
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = -1

Query: 733  SDARRGFLNEDTLGLPINENPQETYPDFMMTSSSEKDQSEQRSDCLGTLRAVQDLINQYD 554
            S  RR    + T G  +  +  E+ PD  +TSS  +  ++  +  L  +RAV D I    
Sbjct: 1765 SSRRRQQRKQQTPG-DVESDESESDPD-QLTSSRTESSNQLDAGKLKHIRAVSDFIYHGT 1822

Query: 553  GMTDEDKSKMS 521
              T  D S MS
Sbjct: 1823 SSTSSDISPMS 1833


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.081
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = -1

Query: 733  SDARRGFLNEDTLGLPINENPQETYPDFMMTSSSEKDQSEQRSDCLGTLRAVQDLINQYD 554
            S  RR    + T G  +  +  E+ PD  +TSS  +  ++  +  L  +RAV D I    
Sbjct: 1761 SSRRRQQRKQQTPG-DVESDESESDPD-QLTSSRTESSNQLDAGKLKHIRAVSDFIYHGT 1818

Query: 553  GMTDEDKSKMS 521
              T  D S MS
Sbjct: 1819 SSTSSDISPMS 1829


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 170 HLFCVSQCPVINVPEISFRSSLLVRQLLRHVF 265
           H   V  C V+ +PE +F+  L +++L    F
Sbjct: 95  HELHVHGCKVLRIPEGAFQPLLELKKLTVQTF 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,083
Number of Sequences: 438
Number of extensions: 4268
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)