Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i14
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.2  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   5.6  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    26   5.6  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    26   7.4  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    25   9.8  

>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 437 CFKSGGIHFPLIRKLICNK-ILWNFSLKLHRCLKIGPCHCMVY 562
           C +  G+      +L+ NK  L N +LKL+ C K G C  M +
Sbjct: 113 CMREDGL-VKYTNELLLNKETLNNEALKLYSCAKAGICRWMAF 154


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 401 SSHIQYLIFPS*CFKSGGIHFPLIRKLICNKILWN 505
           SS I Y IFP+    S GI F +    I  + +WN
Sbjct: 584 SSFIFYCIFPNHIQHSSGISFFVTLAEIMRRCMWN 618


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 440 FKSGGIHFPLIRKLICNKILWNFSLKLHRCLKIGPCHCMV 559
           F SG   + L R ++  K +  F     +C+ +  C C++
Sbjct: 220 FHSGVFSYKLFRAILIRKKIGQFPFGPMQCILVISCQCLI 259


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 271 FKYTVNTAGILSSFLTQSAELPEKLYIKLAVLP*KYDT 384
           F Y+  T GIL++FLT    +P  ++I L  +P  +DT
Sbjct: 131 FSYSSGTNGILATFLT---AIPPNIFILL--VPKSFDT 163


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 257 VYPHRNNVKILTDIYSTILEETLHLTESLYEPLFNSIVSVNSDF 126
           V  HR +V+  T + + +L+E       LY+  ++    +NSDF
Sbjct: 547 VQVHRESVRFETGVATFLLQEVKKTVLPLYQRFYDKY--INSDF 588


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,478
Number of Sequences: 5004
Number of extensions: 63136
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)