Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i14
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          24   1.5  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              24   1.9  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              24   1.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   7.8  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 651 RNKGFVNLFKTNFSKSDYFHKFTEFSPNY 565
           R+  F +++KT     DY+HK+ E  P Y
Sbjct: 413 RDPVFFSIYKTIL---DYYHKYKENLPKY 438


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 651 RNKGFVNLFKTNFSKSDYFHKFTEFSPNY 565
           R+  F +++KT     DY+HK+ E  P Y
Sbjct: 413 RDPVFFSIYKTIL---DYYHKYKENLPKY 438


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 651 RNKGFVNLFKTNFSKSDYFHKFTEFSPNY 565
           R+  F +++KT     DY+HK+ E  P Y
Sbjct: 39  RDPVFFSIYKTIL---DYYHKYKENLPKY 64


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +1

Query: 91  QEKIIRHSNNM---IKSELTDTILLNNGSYKLSVKCNVSSNIVEYISVNIL 234
           Q  I+  S N    I  ELT   L  N   KL  +C+V S+   YI  N L
Sbjct: 69  QFNIVDESGNFKENIVQELTSIYLDENVIKKLVAECSVISDANIYIRFNKL 119


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +1

Query: 91  QEKIIRHSNNM---IKSELTDTILLNNGSYKLSVKCNVSSNIVEYISVNIL 234
           Q  I+  S N    I  ELT   L  N   KL  +C+V S+   YI  N L
Sbjct: 69  QFNIVDESGNFKENIVQELTSIYLDENVIKKLVAECSVISDANIYIRFNKL 119


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 341 SYILNLQYCHKNMTPHEFYESSHIQYL 421
           S IL L Y H+N   HE  E   + +L
Sbjct: 311 STILILNYHHRNADTHEMSEWVKVVFL 337


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 88  LQEKIIRHSNNMIKSELTDTILLNNGSYKLSVKCNVSSNIVEYISVNI 231
           L  K I H+NN   +   +    NN +Y    K   + N +E I V +
Sbjct: 85  LSNKTI-HNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIEQIPVPV 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,097
Number of Sequences: 438
Number of extensions: 4361
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)