Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11i10
(882 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 280 2e-76
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 33 0.041
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 29 1.2
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 28 2.0
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 28 2.0
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 26 8.2
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 8.2
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 280 bits (686), Expect = 2e-76
Identities = 138/235 (58%), Positives = 173/235 (73%), Gaps = 1/235 (0%)
Frame = -2
Query: 881 YDXADXLVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKAPQTA-AV 705
YD AD LVSK+ F NASNN R+ YYLGRI+A +L+Y+ AH+HLV A+RKAP T AV
Sbjct: 226 YDQADRLVSKTSFLTNASNNLAIRYQYYLGRIRAIQLDYTTAHEHLVSAIRKAPNTVYAV 285
Query: 704 GFRQTVQKLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFGEVLENY 525
F + V KL IVV+LL+G+IPER IFRQ L K L PY +++QAVR+G+L F + L Y
Sbjct: 286 QFLEAVYKLHIVVQLLMGEIPERRIFRQKSLEKTLVPYLRISQAVRIGDLCAFTDALSKY 345
Query: 524 GPQFRNDHTFTLILRLRQNVIKTAIRSIGLSYSRISPKDIARKLGLDSAEDAEFIVAKAI 345
+FR D +TLI RLR VIKT +R I LSYSRIS +D+ KLGLDS E AE+IVAK I
Sbjct: 346 EAEFRFDGLYTLICRLRHTVIKTGLRMISLSYSRISLRDVCIKLGLDSEESAEYIVAKGI 405
Query: 344 RDGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKAMRYP 180
RDGVI+A++D +M++ E+ DIY T +PQ AFH+RI FCL LHN S+K+MRYP
Sbjct: 406 RDGVIDASIDHSNAFMASNEAMDIYSTEQPQQAFHERIQFCLALHNDSIKSMRYP 460
>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 442
Score = 33.5 bits (73), Expect = 0.041
Identities = 28/112 (25%), Positives = 50/112 (44%)
Frame = -2
Query: 863 LVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKAPQTAAVGFRQTVQ 684
++S A+ E F YYLGR + + A HL+ + + P R ++
Sbjct: 208 VISSGADISRATMAELVTFRYYLGRCHLYQRKIHQAKDHLLFSFLQCPDECYHQKRLSLI 267
Query: 683 KLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFGEVLEN 528
L + L+LG P + + + L A P L +A++ G+++ F LE+
Sbjct: 268 YLTTCL-LILGKSPTKGLLEKYKLTAAFEP---LIKALKSGDIKSFRLSLED 315
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 28.7 bits (61), Expect = 1.2
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Frame = -2
Query: 845 FPENASNNEWARFLYYLGRIK-AARLEYSDAHKHLVQALRKAPQT-AAVGFRQTVQKLAI 672
F NNE F++Y+G I + Y +HL + + + +AV + +
Sbjct: 597 FQATDENNEPGNFIFYIGIIDLLTKYSYVKRVEHLWKGINHSDSVISAVPPAEYASRFYK 656
Query: 671 VVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQ---RFGEVLENYGPQFRN 507
VE + P ++ + PL+ Q+V GN++ + G + N P RN
Sbjct: 657 FVESSIK--PTLLVLKPFPLKPQDGQRVNKQQSVNAGNVRTNNKHGSLNNNTAPSSRN 712
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 27.9 bits (59), Expect = 2.0
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Frame = -2
Query: 809 FLYYLGRIKAARLEYSDAHKHLVQALRKAPQTAAVGFRQTVQKLA---IVVELLLG-DIP 642
F YYLG + Y +A L A + G+ + ++ + I +L+ +P
Sbjct: 234 FHYYLGIVAFLNQNYKNASAELEIAFSLCHK----GYNRNLELILSYWIPTRILVNHQLP 289
Query: 641 ERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFGEVLE 531
+ + + P + Y LT+A++ GNL FG+ L+
Sbjct: 290 TKNLLSKFP--NLASVYIPLTRALKSGNLGEFGKCLQ 324
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 715 VWGAFLKACTRCLCASLYSNLAAFILPR*YRNLAHSLLL 831
V A L CT L+S L F +P Y + H LLL
Sbjct: 307 VLAALLVYCTEEQAYFLFSQLCEFYIPGYYAKIIHGLLL 345
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 341 DGVIEATLDPVKGYMSNKESSDIYCTREPQLAFH 240
D V E L+ V G+ ++SSD CT P H
Sbjct: 382 DYVNELQLEIVPGFSHGRDSSDTSCTESPPEPSH 415
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 266 YNKYLSFLYYSCSPLQG 316
YN Y +L SC+P+QG
Sbjct: 349 YNDYQLYLLLSCAPIQG 365
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 8.2
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +1
Query: 529 FSNTSPNLCKFPRRTAWVSWKYGANALRSGA*RKITRSGISPNSNST 669
FS ++ NL K R+ WV +K G N GA K GI +SN T
Sbjct: 251 FSLSTINLIKNDERSLWVHFKAGTN--MDGA--KEAVDGIQLDSNFT 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,502,300
Number of Sequences: 5004
Number of extensions: 71059
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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