Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11i10
(882 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D67025-1|BAA23651.1| 534|Homo sapiens proteasome subunit p58 pr... 366 e-101
CR456772-1|CAG33053.1| 534|Homo sapiens PSMD3 protein. 366 e-101
BT007217-1|AAP35881.1| 534|Homo sapiens proteasome (prosome, ma... 366 e-101
BC025686-1|AAH25686.1| 534|Homo sapiens proteasome (prosome, ma... 366 e-101
BC020518-1|AAH20518.1| 534|Homo sapiens proteasome (prosome, ma... 366 e-101
BC004859-1|AAH04859.1| 534|Homo sapiens proteasome (prosome, ma... 366 e-101
BC000074-1|AAH00074.1| 534|Homo sapiens proteasome (prosome, ma... 366 e-101
AK055799-1|BAB71019.1| 517|Homo sapiens protein ( Homo sapiens ... 366 e-101
BC012302-1|AAH12302.1| 534|Homo sapiens proteasome (prosome, ma... 364 e-100
AK094206-1|BAC04310.1| 521|Homo sapiens protein ( Homo sapiens ... 363 e-100
AF091075-1|AAC72944.1| 115|Homo sapiens proteasome subunit p58 ... 128 3e-29
U83303-1|AAC51337.1| 162|Homo sapiens line-1 reverse transcript... 35 0.34
U93574-2|AAC51279.1| 1275|Homo sapiens putative p150 protein. 32 2.4
U93572-2|AAC51276.1| 1275|Homo sapiens putative p150 protein. 32 2.4
U93569-2|AAC51271.1| 1275|Homo sapiens putative p150 protein. 32 2.4
U93565-1|AAC51264.1| 1275|Homo sapiens putative p150 protein. 32 2.4
U93563-1|AAC51261.1| 1275|Homo sapiens putative p150 protein. 32 2.4
U09116-2|AAB60345.1| 1275|Homo sapiens ORF2 protein. 32 2.4
M80343-2|AAB59368.1| 1275|Homo sapiens protein ( Human transposo... 32 2.4
M80340-1|AAA51622.1| 1275|Homo sapiens ORF2 protein. 32 2.4
M22334-1|AAA88038.1| 641|Homo sapiens unknown protein protein. 32 2.4
M22333-1|AAA88037.1| 1192|Homo sapiens unknown protein protein. 32 2.4
AF421375-1|AAL50637.1| 1275|Homo sapiens unknown protein. 32 2.4
AF149422-2|AAD38785.1| 1275|Homo sapiens unknown protein. 32 2.4
AF003535-1|AAD04635.1| 573|Homo sapiens ORF2-like protein protein. 32 2.4
U93568-2|AAC51269.1| 1275|Homo sapiens putative p150 protein. 32 3.2
AF148856-2|AAD39215.1| 1275|Homo sapiens unknown protein. 32 3.2
U93570-2|AAC51273.1| 1275|Homo sapiens putative p150 protein. 31 4.2
AY878356-1|AAW63045.1| 280|Homo sapiens reverse transcriptase-l... 31 4.2
X52235-2|CAA36480.1| 712|Homo sapiens protein ( Human DNA for L... 31 5.5
U93564-2|AAC51263.1| 1275|Homo sapiens putative p150 protein. 31 5.5
AK096400-1|BAC04777.1| 644|Homo sapiens protein ( Homo sapiens ... 31 5.5
AK091740-1|BAC03736.1| 473|Homo sapiens protein ( Homo sapiens ... 31 5.5
>D67025-1|BAA23651.1| 534|Homo sapiens proteasome subunit p58
protein.
Length = 534
Score = 366 bits (900), Expect = e-101
Identities = 179/271 (66%), Positives = 211/271 (77%)
Frame = -2
Query: 881 YDXADXLVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKAPQTAAVG 702
YD A+ LVSKSVFPE A+NNEWAR+LYY GRIKA +LEYS+A + + ALRKAPQ AVG
Sbjct: 264 YDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVG 323
Query: 701 FRQTVQKLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFGEVLENYG 522
F+QTV KL IVVELLLG+IP+R+ FRQ L+++L PYF LTQAVR GNL +F +VL+ +G
Sbjct: 324 FKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFG 383
Query: 521 PQFRNDHTFTLILRLRQNVIKTAIRSIGLSYSRISPKDIARKLGLDSAEDAEFIVAKAIR 342
+F+ D T+TLI+RLR NVIKT +R I LSYSRIS DIA+KL LDS EDAEFIVAKAIR
Sbjct: 384 EKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIR 443
Query: 341 DGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKAMRYPPKSYGK 162
DGVIEA+++ KGY+ +KE DIY TREPQLAFHQRISFCLD+HN SVKAMR+PPKSY K
Sbjct: 444 DGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNK 503
Query: 161 XXXXXXXXXXXXXXXXXXAKEMAEEDDDGFP 69
AKEMAE+DDD FP
Sbjct: 504 DLESAEERREREQQDLEFAKEMAEDDDDSFP 534
>CR456772-1|CAG33053.1| 534|Homo sapiens PSMD3 protein.
Length = 534
Score = 366 bits (900), Expect = e-101
Identities = 179/271 (66%), Positives = 211/271 (77%)
Frame = -2
Query: 881 YDXADXLVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKAPQTAAVG 702
YD A+ LVSKSVFPE A+NNEWAR+LYY GRIKA +LEYS+A + + ALRKAPQ AVG
Sbjct: 264 YDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVG 323
Query: 701 FRQTVQKLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFGEVLENYG 522
F+QTV KL IVVELLLG+IP+R+ FRQ L+++L PYF LTQAVR GNL +F +VL+ +G
Sbjct: 324 FKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFG 383
Query: 521 PQFRNDHTFTLILRLRQNVIKTAIRSIGLSYSRISPKDIARKLGLDSAEDAEFIVAKAIR 342
+F+ D T+TLI+RLR NVIKT +R I LSYSRIS DIA+KL LDS EDAEFIVAKAIR
Sbjct: 384 EKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIR 443
Query: 341 DGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKAMRYPPKSYGK 162
DGVIEA+++ KGY+ +KE DIY TREPQLAFHQRISFCLD+HN SVKAMR+PPKSY K
Sbjct: 444 DGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNK 503
Query: 161 XXXXXXXXXXXXXXXXXXAKEMAEEDDDGFP 69
AKEMAE+DDD FP
Sbjct: 504 DLESAEERREREQQDLEFAKEMAEDDDDSFP 534
>BT007217-1|AAP35881.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 366 bits (900), Expect = e-101
Identities = 179/271 (66%), Positives = 211/271 (77%)
Frame = -2
Query: 881 YDXADXLVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKAPQTAAVG 702
YD A+ LVSKSVFPE A+NNEWAR+LYY GRIKA +LEYS+A + + ALRKAPQ AVG
Sbjct: 264 YDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVG 323
Query: 701 FRQTVQKLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFGEVLENYG 522
F+QTV KL IVVELLLG+IP+R+ FRQ L+++L PYF LTQAVR GNL +F +VL+ +G
Sbjct: 324 FKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFG 383
Query: 521 PQFRNDHTFTLILRLRQNVIKTAIRSIGLSYSRISPKDIARKLGLDSAEDAEFIVAKAIR 342
+F+ D T+TLI+RLR NVIKT +R I LSYSRIS DIA+KL LDS EDAEFIVAKAIR
Sbjct: 384 EKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIR 443
Query: 341 DGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKAMRYPPKSYGK 162
DGVIEA+++ KGY+ +KE DIY TREPQLAFHQRISFCLD+HN SVKAMR+PPKSY K
Sbjct: 444 DGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNK 503
Query: 161 XXXXXXXXXXXXXXXXXXAKEMAEEDDDGFP 69
AKEMAE+DDD FP
Sbjct: 504 DLESAEERREREQQDLEFAKEMAEDDDDSFP 534
>BC025686-1|AAH25686.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 366 bits (900), Expect = e-101
Identities = 179/271 (66%), Positives = 211/271 (77%)
Frame = -2
Query: 881 YDXADXLVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKAPQTAAVG 702
YD A+ LVSKSVFPE A+NNEWAR+LYY GRIKA +LEYS+A + + ALRKAPQ AVG
Sbjct: 264 YDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVG 323
Query: 701 FRQTVQKLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFGEVLENYG 522
F+QTV KL IVVELLLG+IP+R+ FRQ L+++L PYF LTQAVR GNL +F +VL+ +G
Sbjct: 324 FKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFG 383
Query: 521 PQFRNDHTFTLILRLRQNVIKTAIRSIGLSYSRISPKDIARKLGLDSAEDAEFIVAKAIR 342
+F+ D T+TLI+RLR NVIKT +R I LSYSRIS DIA+KL LDS EDAEFIVAKAIR
Sbjct: 384 EKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIR 443
Query: 341 DGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKAMRYPPKSYGK 162
DGVIEA+++ KGY+ +KE DIY TREPQLAFHQRISFCLD+HN SVKAMR+PPKSY K
Sbjct: 444 DGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNK 503
Query: 161 XXXXXXXXXXXXXXXXXXAKEMAEEDDDGFP 69
AKEMAE+DDD FP
Sbjct: 504 DLESAEERREREQQDLEFAKEMAEDDDDSFP 534
>BC020518-1|AAH20518.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 366 bits (900), Expect = e-101
Identities = 179/271 (66%), Positives = 211/271 (77%)
Frame = -2
Query: 881 YDXADXLVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKAPQTAAVG 702
YD A+ LVSKSVFPE A+NNEWAR+LYY GRIKA +LEYS+A + + ALRKAPQ AVG
Sbjct: 264 YDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVG 323
Query: 701 FRQTVQKLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFGEVLENYG 522
F+QTV KL IVVELLLG+IP+R+ FRQ L+++L PYF LTQAVR GNL +F +VL+ +G
Sbjct: 324 FKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFG 383
Query: 521 PQFRNDHTFTLILRLRQNVIKTAIRSIGLSYSRISPKDIARKLGLDSAEDAEFIVAKAIR 342
+F+ D T+TLI+RLR NVIKT +R I LSYSRIS DIA+KL LDS EDAEFIVAKAIR
Sbjct: 384 EKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIR 443
Query: 341 DGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKAMRYPPKSYGK 162
DGVIEA+++ KGY+ +KE DIY TREPQLAFHQRISFCLD+HN SVKAMR+PPKSY K
Sbjct: 444 DGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNK 503
Query: 161 XXXXXXXXXXXXXXXXXXAKEMAEEDDDGFP 69
AKEMAE+DDD FP
Sbjct: 504 DLESAEERREREQQDLEFAKEMAEDDDDSFP 534
>BC004859-1|AAH04859.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 366 bits (900), Expect = e-101
Identities = 179/271 (66%), Positives = 211/271 (77%)
Frame = -2
Query: 881 YDXADXLVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKAPQTAAVG 702
YD A+ LVSKSVFPE A+NNEWAR+LYY GRIKA +LEYS+A + + ALRKAPQ AVG
Sbjct: 264 YDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVG 323
Query: 701 FRQTVQKLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFGEVLENYG 522
F+QTV KL IVVELLLG+IP+R+ FRQ L+++L PYF LTQAVR GNL +F +VL+ +G
Sbjct: 324 FKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFG 383
Query: 521 PQFRNDHTFTLILRLRQNVIKTAIRSIGLSYSRISPKDIARKLGLDSAEDAEFIVAKAIR 342
+F+ D T+TLI+RLR NVIKT +R I LSYSRIS DIA+KL LDS EDAEFIVAKAIR
Sbjct: 384 EKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIR 443
Query: 341 DGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKAMRYPPKSYGK 162
DGVIEA+++ KGY+ +KE DIY TREPQLAFHQRISFCLD+HN SVKAMR+PPKSY K
Sbjct: 444 DGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNK 503
Query: 161 XXXXXXXXXXXXXXXXXXAKEMAEEDDDGFP 69
AKEMAE+DDD FP
Sbjct: 504 DLESAEERREREQQDLEFAKEMAEDDDDSFP 534
>BC000074-1|AAH00074.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 366 bits (900), Expect = e-101
Identities = 179/271 (66%), Positives = 211/271 (77%)
Frame = -2
Query: 881 YDXADXLVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKAPQTAAVG 702
YD A+ LVSKSVFPE A+NNEWAR+LYY GRIKA +LEYS+A + + ALRKAPQ AVG
Sbjct: 264 YDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVG 323
Query: 701 FRQTVQKLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFGEVLENYG 522
F+QTV KL IVVELLLG+IP+R+ FRQ L+++L PYF LTQAVR GNL +F +VL+ +G
Sbjct: 324 FKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFG 383
Query: 521 PQFRNDHTFTLILRLRQNVIKTAIRSIGLSYSRISPKDIARKLGLDSAEDAEFIVAKAIR 342
+F+ D T+TLI+RLR NVIKT +R I LSYSRIS DIA+KL LDS EDAEFIVAKAIR
Sbjct: 384 EKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIR 443
Query: 341 DGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKAMRYPPKSYGK 162
DGVIEA+++ KGY+ +KE DIY TREPQLAFHQRISFCLD+HN SVKAMR+PPKSY K
Sbjct: 444 DGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNK 503
Query: 161 XXXXXXXXXXXXXXXXXXAKEMAEEDDDGFP 69
AKEMAE+DDD FP
Sbjct: 504 DLESAEERREREQQDLEFAKEMAEDDDDSFP 534
>AK055799-1|BAB71019.1| 517|Homo sapiens protein ( Homo sapiens cDNA
FLJ31237 fis, clone KIDNE2004846, highly similar to 26S
PROTEASOME REGULATORY SUBUNIT S3. ).
Length = 517
Score = 366 bits (900), Expect = e-101
Identities = 179/271 (66%), Positives = 211/271 (77%)
Frame = -2
Query: 881 YDXADXLVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKAPQTAAVG 702
YD A+ LVSKSVFPE A+NNEWAR+LYY GRIKA +LEYS+A + + ALRKAPQ AVG
Sbjct: 247 YDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVG 306
Query: 701 FRQTVQKLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFGEVLENYG 522
F+QTV KL IVVELLLG+IP+R+ FRQ L+++L PYF LTQAVR GNL +F +VL+ +G
Sbjct: 307 FKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFG 366
Query: 521 PQFRNDHTFTLILRLRQNVIKTAIRSIGLSYSRISPKDIARKLGLDSAEDAEFIVAKAIR 342
+F+ D T+TLI+RLR NVIKT +R I LSYSRIS DIA+KL LDS EDAEFIVAKAIR
Sbjct: 367 EKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIR 426
Query: 341 DGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKAMRYPPKSYGK 162
DGVIEA+++ KGY+ +KE DIY TREPQLAFHQRISFCLD+HN SVKAMR+PPKSY K
Sbjct: 427 DGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNK 486
Query: 161 XXXXXXXXXXXXXXXXXXAKEMAEEDDDGFP 69
AKEMAE+DDD FP
Sbjct: 487 DLESAEERREREQQDLEFAKEMAEDDDDSFP 517
>BC012302-1|AAH12302.1| 534|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 3 protein.
Length = 534
Score = 364 bits (895), Expect = e-100
Identities = 179/271 (66%), Positives = 210/271 (77%)
Frame = -2
Query: 881 YDXADXLVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKAPQTAAVG 702
YD A+ LVSKSVFPE A+NNEWAR+LYY GRIKA +LEYS A + + ALRKAPQ AVG
Sbjct: 264 YDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSVARRTMTNALRKAPQHTAVG 323
Query: 701 FRQTVQKLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFGEVLENYG 522
F+QTV KL IVVELLLG+IP+R+ FRQ L+++L PYF LTQAVR GNL +F +VL+ +G
Sbjct: 324 FKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFG 383
Query: 521 PQFRNDHTFTLILRLRQNVIKTAIRSIGLSYSRISPKDIARKLGLDSAEDAEFIVAKAIR 342
+F+ D T+TLI+RLR NVIKT +R I LSYSRIS DIA+KL LDS EDAEFIVAKAIR
Sbjct: 384 EKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIR 443
Query: 341 DGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKAMRYPPKSYGK 162
DGVIEA+++ KGY+ +KE DIY TREPQLAFHQRISFCLD+HN SVKAMR+PPKSY K
Sbjct: 444 DGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNK 503
Query: 161 XXXXXXXXXXXXXXXXXXAKEMAEEDDDGFP 69
AKEMAE+DDD FP
Sbjct: 504 DLESAEERREREQQDLEFAKEMAEDDDDSFP 534
>AK094206-1|BAC04310.1| 521|Homo sapiens protein ( Homo sapiens cDNA
FLJ36887 fis, clone BNGH42005504, highly similar to 26S
PROTEASOME REGULATORY SUBUNIT S3. ).
Length = 521
Score = 363 bits (894), Expect = e-100
Identities = 178/271 (65%), Positives = 210/271 (77%)
Frame = -2
Query: 881 YDXADXLVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKAPQTAAVG 702
YD A+ LVSKSVFPE A+NNEWAR+LYY GRIKA +LEYS+A + + ALRKAPQ AVG
Sbjct: 251 YDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVG 310
Query: 701 FRQTVQKLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFGEVLENYG 522
+QTV KL IVVELLLG+IP+R+ FRQ L+++L PYF LTQAVR GNL +F +VL+ +G
Sbjct: 311 LKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFG 370
Query: 521 PQFRNDHTFTLILRLRQNVIKTAIRSIGLSYSRISPKDIARKLGLDSAEDAEFIVAKAIR 342
+F+ D T+TLI+RLR NVIKT +R I LSYSRIS DIA+KL LDS EDAEFIVAKAIR
Sbjct: 371 EKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIR 430
Query: 341 DGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKAMRYPPKSYGK 162
DGVIEA+++ KGY+ +KE DIY TREPQLAFHQRISFCLD+HN SVKAMR+PPKSY K
Sbjct: 431 DGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNK 490
Query: 161 XXXXXXXXXXXXXXXXXXAKEMAEEDDDGFP 69
AKEMAE+DDD FP
Sbjct: 491 DLESAEERREREQQDLEFAKEMAEDDDDSFP 521
>AF091075-1|AAC72944.1| 115|Homo sapiens proteasome subunit p58
protein.
Length = 115
Score = 128 bits (308), Expect = 3e-29
Identities = 61/98 (62%), Positives = 71/98 (72%)
Frame = -2
Query: 362 IVAKAIRDGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKAMRY 183
++AKAIRDGVIEA+++ KGY+ +KE DIY TREPQLAFHQRISFCLD+HN SVKAMR+
Sbjct: 18 LLAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRF 77
Query: 182 PPKSYGKXXXXXXXXXXXXXXXXXXAKEMAEEDDDGFP 69
PPKSY K AKEMAE+DDD FP
Sbjct: 78 PPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 115
>U83303-1|AAC51337.1| 162|Homo sapiens line-1 reverse transcriptase
protein.
Length = 162
Score = 35.1 bits (77), Expect = 0.34
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L N +KE++ W N+P W K+ +V+ + K+ Y +N + I+ +T
Sbjct: 108 KENYKPLLNEIKEDTNKWKNIPCSWVGKINIVNMAILPKVTYRFNTIPIKLPMT 161
>U93574-2|AAC51279.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.4
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>U93572-2|AAC51276.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.4
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>U93569-2|AAC51271.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.4
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>U93565-1|AAC51264.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.4
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>U93563-1|AAC51261.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.4
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>U09116-2|AAB60345.1| 1275|Homo sapiens ORF2 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.4
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>M80343-2|AAB59368.1| 1275|Homo sapiens protein ( Human transposon
L1.2. ).
Length = 1275
Score = 32.3 bits (70), Expect = 2.4
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>M80340-1|AAA51622.1| 1275|Homo sapiens ORF2 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.4
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>M22334-1|AAA88038.1| 641|Homo sapiens unknown protein protein.
Length = 641
Score = 32.3 bits (70), Expect = 2.4
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 148 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 201
>M22333-1|AAA88037.1| 1192|Homo sapiens unknown protein protein.
Length = 1192
Score = 32.3 bits (70), Expect = 2.4
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 699 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 752
>AF421375-1|AAL50637.1| 1275|Homo sapiens unknown protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.4
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>AF149422-2|AAD38785.1| 1275|Homo sapiens unknown protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.4
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>AF003535-1|AAD04635.1| 573|Homo sapiens ORF2-like protein protein.
Length = 573
Score = 32.3 bits (70), Expect = 2.4
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 296 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 349
>U93568-2|AAC51269.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.9 bits (69), Expect = 3.2
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE + W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEETNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>AF148856-2|AAD39215.1| 1275|Homo sapiens unknown protein.
Length = 1275
Score = 31.9 bits (69), Expect = 3.2
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE + W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEETNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 835
>U93570-2|AAC51273.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.5 bits (68), Expect = 4.2
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ +V + K++Y +N + I +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPINLPMT 835
>AY878356-1|AAW63045.1| 280|Homo sapiens reverse transcriptase-like
protein protein.
Length = 280
Score = 31.5 bits (68), Expect = 4.2
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L N ++E++ W N+P W ++ +V + K++Y ++ + I+ LT
Sbjct: 144 KENYKPLLNEIEEDTNKWKNIPCSWIGRINIVKMAILPKVIYRFSAIPIKLPLT 197
>X52235-2|CAA36480.1| 712|Homo sapiens protein ( Human DNA for
LINE-1 transposable element ORFI and II. ).
Length = 712
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ ++ + K++Y +N + I+ +T
Sbjct: 219 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIMKMAILPKVIYRFNTIPIKLPMT 272
>U93564-2|AAC51263.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ ++ + K++Y +N + I+ +T
Sbjct: 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIMKMAILPKVIYRFNAIPIKLPMT 835
>AK096400-1|BAC04777.1| 644|Homo sapiens protein ( Homo sapiens
cDNA FLJ39081 fis, clone NT2RP7018340. ).
Length = 644
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +K+++ W N+P W ++ +V + K++Y +N + I+ +T
Sbjct: 180 KENYKPLLKEIKDDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT 233
>AK091740-1|BAC03736.1| 473|Homo sapiens protein ( Homo sapiens
cDNA FLJ34421 fis, clone HHDPC2002963. ).
Length = 473
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 166 EKNWKVLRNAVKENSKIW-NLPKKWQRKMMMVSHELSYKILY-YNILCIRFQLT 11
++N+K L +KE++ W N+P W ++ ++ + K++Y +N + I+ +T
Sbjct: 181 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIMKMAILPKVIYRFNAIPIKLPMT 234
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,029,333
Number of Sequences: 237096
Number of extensions: 2468917
Number of successful extensions: 8404
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 8223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8393
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -