Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i09
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    99   1e-21
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    29   0.67 
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    29   0.89 
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    28   1.6  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    27   4.8  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    27   4.8  

>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 98.7 bits (235), Expect = 1e-21
 Identities = 47/136 (34%), Positives = 81/136 (59%)
 Frame = -2

Query: 448 IMTLLQFLLKLWGQQLSSAAAGQKAAIKHKMTRATYTQTQVYLKPLMRKLKKKNLPEDIC 269
           ++  LQ  +++W   LSS +     + + +M    + Q +  L  L++ +  + L +DI 
Sbjct: 194 VVAFLQHGIRIWDNFLSSKSINSFESSESQMQLKIFRQAKQDLDVLIQLIVDEALNDDIF 253

Query: 268 DSLTEITKHLLDRNYIMASDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKNVAHVMN 89
            S+ EI        ++ A+D YL++ IGNAPWPIGVTMVGIH R+  +++ +   ++++ 
Sbjct: 254 KSIAEICYRCQKHEFVKANDMYLRLTIGNAPWPIGVTMVGIHERSAHQRLQANPSSNILK 313

Query: 88  DETQRKYIQALKRLMT 41
           DE +RK +QALKR +T
Sbjct: 314 DEKKRKCLQALKRFIT 329



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 775 LPRNEVIKRLRERGHPILLFAETEIQSFKR 686
           L   E+I +LRE   PI LF E+E  + +R
Sbjct: 124 LTLTEIIAKLREMKEPIRLFGESEEATIQR 153


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 724 LLFAETEIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYL 593
           +LF+ T+ +S K L R+ +Q P+      ND       +++ YL
Sbjct: 220 MLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYL 263


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -2

Query: 757  IKRLRERGHPILLFAETEIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYL--NEI 584
            ++ L  RG+ I L+A TE+   K L  I+ Q+  +    RN + E++      ++  N++
Sbjct: 941  LQLLGRRGYEITLYATTEVSRDKWLEHIDNQQTLLQH--RNQWFESVTICSNFFVGDNKV 998

Query: 583  LALGTQNEG 557
             A+G  + G
Sbjct: 999  NAIGVYDSG 1007


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 727 ILLFAETEIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEA 599
           I  F E  I    +++ ++ ++P + R FR+DFQ     V++A
Sbjct: 338 IYFFKELAISISSKMQMLDRRDPILLRVFRSDFQRVTHIVEQA 380


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 556 ENSSKEDALDDSITYETIQEMAKTMGQG 473
           +N+  E  +   I +ETIQ++AK+ G+G
Sbjct: 221 QNTIYESKIPKLIEHETIQKIAKSKGEG 248


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 593 QICFIDFLHRFLEVIP 640
           ++CFIDF+ +FLE+ P
Sbjct: 428 RLCFIDFIKQFLELNP 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,411,245
Number of Sequences: 5004
Number of extensions: 66934
Number of successful extensions: 220
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)