Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11i09
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0817 - 27939192-27939584,27940806-27941561 187 9e-48
07_03_0970 - 23034521-23034928,23036173-23037081 166 2e-41
01_06_1373 - 36729498-36729950,36730024-36730306,36730592-36730605 32 0.71
03_06_0759 - 36059872-36059928,36059934-36060125,36060241-360603... 31 1.2
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536... 31 1.2
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440... 31 1.2
04_03_0331 + 14510848-14511124,14511139-14511528,14511708-145119... 31 1.6
07_01_0780 + 6047375-6047494,6047603-6047713,6047804-6047926,604... 29 3.8
01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973... 29 3.8
02_05_0162 + 26398252-26399886 29 5.0
01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078 29 6.6
>03_05_0817 - 27939192-27939584,27940806-27941561
Length = 382
Score = 187 bits (456), Expect = 9e-48
Identities = 104/261 (39%), Positives = 148/261 (56%), Gaps = 2/261 (0%)
Frame = -2
Query: 781 PALPRNEVIKRLRERGHPILLFAETEIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDE 602
P LPR EVI+RLR P LF E + +RL + +++P + E E
Sbjct: 92 PLLPREEVIRRLRVLRQPATLFGEDDAARLRRLHAV-LEDPAALADV--EAAEIGEGQTN 148
Query: 601 AYLNEILALGTQNEGENSSKEDALDDSITYETIQEMAKTMGQGDRNH--DMNVIMTLLQF 428
+L +I AL + ++S A T + +T + D + IMT +
Sbjct: 149 DFLRDIQALRAKAVAASASA--AAKPKAGAATAESGGETREEVPFEELCDEDKIMTFFKR 206
Query: 427 LLKLWGQQLSSAAAGQKAAIKHKMTRATYTQTQVYLKPLMRKLKKKNLPEDICDSLTEIT 248
L+ W Q++ ++ K K AT Q YL+PL + KKK LPED+ SL E+
Sbjct: 207 LMSEWSQEMDEMPEAERRTAKGKAAVATCKQCARYLEPLFKLCKKKTLPEDVRGSLLEVV 266
Query: 247 KHLLDRNYIMASDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKNVAHVMNDETQRKY 68
+ + R+Y+ A D Y+++AIGN+PWPIGVTMVGIH R+ REKI++ +VAH+MNDET RKY
Sbjct: 267 RCCMRRDYLAAVDNYIKLAIGNSPWPIGVTMVGIHERSAREKIYANSVAHIMNDETTRKY 326
Query: 67 IQALKRLMTKCQEYFPTDPSR 5
+Q++KRLMT CQ +PTDPSR
Sbjct: 327 LQSVKRLMTFCQRKYPTDPSR 347
>07_03_0970 - 23034521-23034928,23036173-23037081
Length = 438
Score = 166 bits (403), Expect = 2e-41
Identities = 100/280 (35%), Positives = 149/280 (53%), Gaps = 23/280 (8%)
Frame = -2
Query: 775 LPRNEVIKRLRERGHPILLFAETEIQSFKRLRRI-------EIQEPEVNRGFRNDFQEAM 617
LPR+EV++RLR P+ LF E + RL+ + +I + ++ G NDF M
Sbjct: 119 LPRHEVVRRLRILREPVTLFGEDDADRLARLKFVLKSGVIDDIDDLDMTEGQTNDFLRDM 178
Query: 616 EKV--------DEAYLNEILALGTQNEGENSSKEDALDDSI--------TYETIQEMAKT 485
++ D + G + GE + D DD + ++ +
Sbjct: 179 VELRKRQRAGRDTYVKGKGKRAGGGDGGEGGAGGDNADDGDGDGRRSGDDADADKDSKRM 238
Query: 484 MGQGDRNHDMNVIMTLLQFLLKLWGQQLSSAAAGQKAAIKHKMTRATYTQTQVYLKPLMR 305
+ + D + I+ + LL W Q+L +K K K AT+ Q YL PL
Sbjct: 239 KTKFEELCDEDKILVFFKKLLIEWNQELDEMPELEKRTAKGKSMVATFKQCARYLSPLFE 298
Query: 304 KLKKKNLPEDICDSLTEITKHLLDRNYIMASDAYLQMAIGNAPWPIGVTMVGIHARTGRE 125
+K+ LP+DI +L I + + R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ RE
Sbjct: 299 FCRKQVLPDDIRQALLVIVECCMKRDYLAAMDQYIKLAIGNAPWPIGVTMVGIHERSARE 358
Query: 124 KIFSKNVAHVMNDETQRKYIQALKRLMTKCQEYFPTDPSR 5
KI++ +VAH+MNDET RKY+Q++KRLMT CQ +P PS+
Sbjct: 359 KIYTNSVAHIMNDETTRKYLQSIKRLMTLCQRRYPALPSK 398
>01_06_1373 - 36729498-36729950,36730024-36730306,36730592-36730605
Length = 249
Score = 31.9 bits (69), Expect = 0.71
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -2
Query: 757 IKRLRERGHPILLFAETEIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEK 611
+K L E G I+ ++++Q+F+ ++ QE E+N DF++ +EK
Sbjct: 90 MKELDEVGDQIMERLDSKMQAFEETAEVQRQEIEMNERVLEDFEDWIEK 138
>03_06_0759 -
36059872-36059928,36059934-36060125,36060241-36060348,
36060440-36060712,36060923-36061009,36061085-36061276,
36061841-36061969,36062087-36062200,36062446-36062490,
36062785-36062956,36063229-36063515,36063989-36064456
Length = 707
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 318 LR*TCVWVYVALVILCLIAAFCPAAAELSC*PHNFSKNCNNVMITFISWFLSPCPIVFAI 497
+R + ++VYV+ VIL ++ E+ H + ++ M+ + FLS P +F +
Sbjct: 470 VRVSAIFVYVSFVILLSVSGVPAHIDEIKIYSHEEANQHSSTMVFLLGHFLSSIPFLFLV 529
Query: 498 S 500
+
Sbjct: 530 T 530
>03_02_1033 +
13550955-13551700,13552837-13553290,13553451-13553648,
13553726-13553807,13554496-13554590
Length = 524
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -2
Query: 778 ALPRNE--VIKRLRERGHPILLFAETEIQSFKRLRRIEIQ 665
A+P N+ V RLR G P+ LF E E++ RLR + ++
Sbjct: 93 AVPTNDSAVRARLRRLGEPVTLFGEREMERRDRLRALMVR 132
>03_02_1031 +
13541327-13542072,13543209-13543662,13543823-13544020,
13544098-13544179,13544868-13544962
Length = 524
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -2
Query: 778 ALPRNE--VIKRLRERGHPILLFAETEIQSFKRLRRIEIQ 665
A+P N+ V RLR G P+ LF E E++ RLR + ++
Sbjct: 93 AVPTNDSAVRARLRRLGEPVTLFGEREMERRDRLRALMVR 132
>04_03_0331 +
14510848-14511124,14511139-14511528,14511708-14511997,
14512080-14512154,14512194-14512409,14512727-14512795,
14512941-14513891
Length = 755
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +2
Query: 446 DYIHIMVSIALSHCFCHFLNGFICNR-IIKCIFFGRIFTFILSS*CQYFI--QICFIDFL 616
D HI V ++ H H I + ++ C F IFTF+L+ C F+ F D +
Sbjct: 631 DGTHIPVQVSKDHLVQHICQHHITTQNVMACCDFDMIFTFVLAR-CPGFMHDMRVFNDAM 689
Query: 617 HRFLEVIPEAP 649
+ V P P
Sbjct: 690 STYNHVFPHPP 700
>07_01_0780 +
6047375-6047494,6047603-6047713,6047804-6047926,
6048035-6048168,6048273-6049551
Length = 588
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = -2
Query: 679 RIEIQEPEVNRGFRNDFQEAMEKVDEAYLNEILALGTQNEGENSSKEDALDDSITYETIQ 500
++++ ++ GF ND + K YL++I TQ+ + DD I
Sbjct: 226 QLDLMLEYLHPGFDNDSFRIVSKESLIYLDKIANQSTQSGHAQDLHQAPFDDRCHCHFIP 285
Query: 499 EMAKTMGQGDRNHD 458
+M + +G RN D
Sbjct: 286 DMDRILGIQSRNDD 299
>01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,
9739708-9739831,9739927-9740635,9741826-9742132,
9742213-9743704
Length = 1108
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 532 LDDSITYETIQEMAKTMGQGDRNHDMNVIMTLLQFLLKLW 413
LD ++ ET+ K G G R+ NV + +L L LW
Sbjct: 987 LDKDLSKETLLAYPKLYGSGQRDEKYNVNLFVLNMLEALW 1026
>02_05_0162 + 26398252-26399886
Length = 544
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -2
Query: 667 QEPEVNRGFRNDFQEAMEKV---DEAYLNEILALGTQNEGENSS 545
+EP+V RGFR+ ++ A EKV E + E+ L + +GE S
Sbjct: 315 EEPKVARGFRSLYKTAGEKVKSLSEEVMGEVRRLMEKYKGEELS 358
>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
Length = 455
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 344 CGSRHFMLDCCFLSCCSR 397
CG R F+L CC SC S+
Sbjct: 340 CGCRFFLLGCCRFSCLSQ 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,826,521
Number of Sequences: 37544
Number of extensions: 389282
Number of successful extensions: 1009
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -