Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11i09
(893 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51990-1|AAB41490.1| 342|Homo sapiens hPrp18 protein. 320 3e-87
BC000794-1|AAH00794.1| 342|Homo sapiens PRP18 pre-mRNA processi... 320 3e-87
AL157392-1|CAI13123.1| 342|Homo sapiens PRP18 pre-mRNA processi... 320 3e-87
AL157392-4|CAI13126.1| 249|Homo sapiens PRP18 pre-mRNA processi... 172 1e-42
AL157392-3|CAI13125.1| 167|Homo sapiens PRP18 pre-mRNA processi... 105 2e-22
AL390866-5|CAI12711.1| 1044|Homo sapiens novel protein protein. 32 2.4
AL355372-1|CAI16402.1| 1044|Homo sapiens novel protein protein. 32 2.4
Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of... 31 4.3
S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein. 31 4.3
D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein. 31 4.3
BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural mainten... 31 4.3
AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance ... 31 4.3
X84373-1|CAA59108.1| 1158|Homo sapiens nuclear factor RIP140 pro... 31 7.5
BC036356-1|AAH36356.1| 264|Homo sapiens C17orf64 protein protein. 31 7.5
AL390866-4|CAI12710.1| 389|Homo sapiens novel protein protein. 30 9.9
AK001238-1|BAA91574.1| 352|Homo sapiens protein ( Homo sapiens ... 30 9.9
>U51990-1|AAB41490.1| 342|Homo sapiens hPrp18 protein.
Length = 342
Score = 320 bits (787), Expect = 3e-87
Identities = 149/260 (57%), Positives = 201/260 (77%), Gaps = 2/260 (0%)
Frame = -2
Query: 775 LPRNEVIKRLRERGHPILLFAETEIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAY 596
L R EVI+RLRERG PI LF ET+ +F+RLR+IEI PEVN+G RND + A++K+D+ Y
Sbjct: 79 LSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQY 138
Query: 595 LNEILALGTQNEGENSSKEDAL--DDSITYETIQEMAKTMGQGDRNHDMNVIMTLLQFLL 422
LNEI+ G Q GE ++ D +++ T E ++ + +++G+GD + DM++I L+FLL
Sbjct: 139 LNEIV--GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKDMDIITKFLKFLL 196
Query: 421 KLWGQQLSSAAAGQKAAIKHKMTRATYTQTQVYLKPLMRKLKKKNLPEDICDSLTEITKH 242
+W ++L++ K +++ K+ AT QT+ YL+PL RKL+K+NLP DI +S+T+I K
Sbjct: 197 GVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKF 256
Query: 241 LLDRNYIMASDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKNVAHVMNDETQRKYIQ 62
+L R Y+ A+DAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSK+VAHV+NDETQRKYIQ
Sbjct: 257 MLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQ 316
Query: 61 ALKRLMTKCQEYFPTDPSRC 2
LKRLMT CQ++FPTDPS+C
Sbjct: 317 GLKRLMTICQKHFPTDPSKC 336
>BC000794-1|AAH00794.1| 342|Homo sapiens PRP18 pre-mRNA processing
factor 18 homolog (S. cerevisiae) protein.
Length = 342
Score = 320 bits (787), Expect = 3e-87
Identities = 149/260 (57%), Positives = 201/260 (77%), Gaps = 2/260 (0%)
Frame = -2
Query: 775 LPRNEVIKRLRERGHPILLFAETEIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAY 596
L R EVI+RLRERG PI LF ET+ +F+RLR+IEI PEVN+G RND + A++K+D+ Y
Sbjct: 79 LSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQY 138
Query: 595 LNEILALGTQNEGENSSKEDAL--DDSITYETIQEMAKTMGQGDRNHDMNVIMTLLQFLL 422
LNEI+ G Q GE ++ D +++ T E ++ + +++G+GD + DM++I L+FLL
Sbjct: 139 LNEIV--GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKDMDIITKFLKFLL 196
Query: 421 KLWGQQLSSAAAGQKAAIKHKMTRATYTQTQVYLKPLMRKLKKKNLPEDICDSLTEITKH 242
+W ++L++ K +++ K+ AT QT+ YL+PL RKL+K+NLP DI +S+T+I K
Sbjct: 197 GVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKF 256
Query: 241 LLDRNYIMASDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKNVAHVMNDETQRKYIQ 62
+L R Y+ A+DAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSK+VAHV+NDETQRKYIQ
Sbjct: 257 MLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQ 316
Query: 61 ALKRLMTKCQEYFPTDPSRC 2
LKRLMT CQ++FPTDPS+C
Sbjct: 317 GLKRLMTICQKHFPTDPSKC 336
>AL157392-1|CAI13123.1| 342|Homo sapiens PRP18 pre-mRNA processing
factor 18 homolog (S. cerevisiae) protein.
Length = 342
Score = 320 bits (787), Expect = 3e-87
Identities = 149/260 (57%), Positives = 201/260 (77%), Gaps = 2/260 (0%)
Frame = -2
Query: 775 LPRNEVIKRLRERGHPILLFAETEIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAY 596
L R EVI+RLRERG PI LF ET+ +F+RLR+IEI PEVN+G RND + A++K+D+ Y
Sbjct: 79 LSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQY 138
Query: 595 LNEILALGTQNEGENSSKEDAL--DDSITYETIQEMAKTMGQGDRNHDMNVIMTLLQFLL 422
LNEI+ G Q GE ++ D +++ T E ++ + +++G+GD + DM++I L+FLL
Sbjct: 139 LNEIV--GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKDMDIITKFLKFLL 196
Query: 421 KLWGQQLSSAAAGQKAAIKHKMTRATYTQTQVYLKPLMRKLKKKNLPEDICDSLTEITKH 242
+W ++L++ K +++ K+ AT QT+ YL+PL RKL+K+NLP DI +S+T+I K
Sbjct: 197 GVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKF 256
Query: 241 LLDRNYIMASDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKNVAHVMNDETQRKYIQ 62
+L R Y+ A+DAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSK+VAHV+NDETQRKYIQ
Sbjct: 257 MLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQ 316
Query: 61 ALKRLMTKCQEYFPTDPSRC 2
LKRLMT CQ++FPTDPS+C
Sbjct: 317 GLKRLMTICQKHFPTDPSKC 336
>AL157392-4|CAI13126.1| 249|Homo sapiens PRP18 pre-mRNA processing
factor 18 homolog (S. cerevisiae) protein.
Length = 249
Score = 172 bits (419), Expect = 1e-42
Identities = 82/179 (45%), Positives = 126/179 (70%), Gaps = 2/179 (1%)
Frame = -2
Query: 775 LPRNEVIKRLRERGHPILLFAETEIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAY 596
L R EVI+RLRERG PI LF ET+ +F+RLR+IEI PEVN+G RND + A++K+D+ Y
Sbjct: 73 LSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQY 132
Query: 595 LNEILALGTQNEGENSSKED--ALDDSITYETIQEMAKTMGQGDRNHDMNVIMTLLQFLL 422
LNEI +G Q GE ++ D +++ T E ++ + +++G+GD + DM++I L+FLL
Sbjct: 133 LNEI--VGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKDMDIITKFLKFLL 190
Query: 421 KLWGQQLSSAAAGQKAAIKHKMTRATYTQTQVYLKPLMRKLKKKNLPEDICDSLTEITK 245
+W ++L++ K +++ K+ AT QT+ YL+PL RKL+K+NLP DI +S+T+I K
Sbjct: 191 GVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIK 249
>AL157392-3|CAI13125.1| 167|Homo sapiens PRP18 pre-mRNA processing
factor 18 homolog (S. cerevisiae) protein.
Length = 167
Score = 105 bits (252), Expect = 2e-22
Identities = 50/104 (48%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
Frame = -2
Query: 775 LPRNEVIKRLRERGHPILLFAETEIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAY 596
L R EVI+RLRERG PI LF ET+ +F+RLR+IEI PEVN+G RND + A++K+D+ Y
Sbjct: 64 LSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQY 123
Query: 595 LNEILALGTQNEGENSSKED--ALDDSITYETIQEMAKTMGQGD 470
LNEI +G Q GE ++ D +++ T E ++ + +++G+GD
Sbjct: 124 LNEI--VGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD 165
>AL390866-5|CAI12711.1| 1044|Homo sapiens novel protein protein.
Length = 1044
Score = 32.3 bits (70), Expect = 2.4
Identities = 21/95 (22%), Positives = 42/95 (44%)
Frame = -2
Query: 706 EIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYLNEILALGTQNEGENSSKEDALD 527
EIQ K ++E P V+ G +++ EK++E + E + +E + D
Sbjct: 387 EIQEDKHTGKLEKPRPSVSHGRAQLLRKSAEKIEETVSDSSSESEEDEEPPDHRQEASAD 446
Query: 526 DSITYETIQEMAKTMGQGDRNHDMNVIMTLLQFLL 422
Y IQ++ K + G++ + + ++ F L
Sbjct: 447 LPSEYWQIQKLVKYLKGGNQTATVIALCSMRDFSL 481
>AL355372-1|CAI16402.1| 1044|Homo sapiens novel protein protein.
Length = 1044
Score = 32.3 bits (70), Expect = 2.4
Identities = 21/95 (22%), Positives = 42/95 (44%)
Frame = -2
Query: 706 EIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYLNEILALGTQNEGENSSKEDALD 527
EIQ K ++E P V+ G +++ EK++E + E + +E + D
Sbjct: 387 EIQEDKHTGKLEKPRPSVSHGRAQLLRKSAEKIEETVSDSSSESEEDEEPPDHRQEASAD 446
Query: 526 DSITYETIQEMAKTMGQGDRNHDMNVIMTLLQFLL 422
Y IQ++ K + G++ + + ++ F L
Sbjct: 447 LPSEYWQIQKLVKYLKGGNQTATVIALCSMRDFSL 481
>Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of
chromosomes 1A protein.
Length = 1233
Score = 31.5 bits (68), Expect = 4.3
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Frame = -2
Query: 682 RRIEIQEPEVNRGFRNDFQ--EAMEKVDEAYLNEILALGTQNEGENSSKEDALDDSITYE 509
+R+E + + G + DF+ + E D+ ++ E +NE E KE+ I E
Sbjct: 806 KRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMKIIDE 865
Query: 508 TI--------QEMAKTMGQGDRNHDMNVI 446
T+ Q +AK D+NH+M I
Sbjct: 866 TMAQLQDLKNQHLAKKSEVNDKNHEMEEI 894
>S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein.
Length = 1233
Score = 31.5 bits (68), Expect = 4.3
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Frame = -2
Query: 682 RRIEIQEPEVNRGFRNDFQ--EAMEKVDEAYLNEILALGTQNEGENSSKEDALDDSITYE 509
+R+E + + G + DF+ + E D+ ++ E +NE E KE+ I E
Sbjct: 806 KRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMKIIDE 865
Query: 508 TI--------QEMAKTMGQGDRNHDMNVI 446
T+ Q +AK D+NH+M I
Sbjct: 866 TMAQLQDLKNQHLAKKSEVNDKNHEMEEI 894
>D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein.
Length = 1233
Score = 31.5 bits (68), Expect = 4.3
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Frame = -2
Query: 682 RRIEIQEPEVNRGFRNDFQ--EAMEKVDEAYLNEILALGTQNEGENSSKEDALDDSITYE 509
+R+E + + G + DF+ + E D+ ++ E +NE E KE+ I E
Sbjct: 806 KRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMKIIDE 865
Query: 508 TI--------QEMAKTMGQGDRNHDMNVI 446
T+ Q +AK D+NH+M I
Sbjct: 866 TMAQLQDLKNQHLAKKSEVNDKNHEMEEI 894
>BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural maintenance
of chromosomes 1-like 1 protein.
Length = 1233
Score = 31.5 bits (68), Expect = 4.3
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Frame = -2
Query: 682 RRIEIQEPEVNRGFRNDFQ--EAMEKVDEAYLNEILALGTQNEGENSSKEDALDDSITYE 509
+R+E + + G + DF+ + E D+ ++ E +NE E KE+ I E
Sbjct: 806 KRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMKIIDE 865
Query: 508 TI--------QEMAKTMGQGDRNHDMNVI 446
T+ Q +AK D+NH+M I
Sbjct: 866 TMAQLQDLKNQHLAKKSEVNDKNHEMEEI 894
>AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance of
chromosomes 1A protein.
Length = 1233
Score = 31.5 bits (68), Expect = 4.3
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Frame = -2
Query: 682 RRIEIQEPEVNRGFRNDFQ--EAMEKVDEAYLNEILALGTQNEGENSSKEDALDDSITYE 509
+R+E + + G + DF+ + E D+ ++ E +NE E KE+ I E
Sbjct: 806 KRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMKIIDE 865
Query: 508 TI--------QEMAKTMGQGDRNHDMNVI 446
T+ Q +AK D+NH+M I
Sbjct: 866 TMAQLQDLKNQHLAKKSEVNDKNHEMEEI 894
>X84373-1|CAA59108.1| 1158|Homo sapiens nuclear factor RIP140
protein.
Length = 1158
Score = 30.7 bits (66), Expect = 7.5
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Frame = -2
Query: 565 NEGENSSKEDALDDSITYETIQEMAKTMGQGDRNHDMNVIMTLLQFLLKLWGQQLSSAAA 386
+E N++K L DSI +++ A G D TLL LL+ + +L + A
Sbjct: 90 SEDWNAAKRKRLSDSIMNLNVKKEALLAGMVDSVRKGKQDSTLLASLLQSFSSRLQTVAL 149
Query: 385 GQKA---------AIKHKMTRA-----TYTQTQVYLKPLMRKLKKKNLPEDICDSLTEIT 248
Q+ A+ H + Y +LK L++K K K+ D +L ++T
Sbjct: 150 SQQIRQSLKEQGYALSHDSLKVEKDLRCYGVASSHLKTLLKKSKVKDQKPD--TNLPDVT 207
Query: 247 KHLL 236
K+L+
Sbjct: 208 KNLI 211
>BC036356-1|AAH36356.1| 264|Homo sapiens C17orf64 protein protein.
Length = 264
Score = 30.7 bits (66), Expect = 7.5
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Frame = -2
Query: 559 GENSSKEDALDD--SITYE---TIQEMAKTMGQGDRNHDMNVIMTLLQFLLKLWGQQLSS 395
G SS +A D S T E T EM + GQG +T + L + SS
Sbjct: 3 GHRSSGSEARGDVGSATLEPTGTPAEMEASDGQGGEGDKPLEQVTNVSCL-----ETSSS 57
Query: 394 AAAGQKAAIKHK--MTRATYTQTQVYLKPLMRKLKKKNLPEDI 272
A+ + + ++H + + T+ + YL+PL + L+K +LP D+
Sbjct: 58 ASPARDSLMRHAKGLDQDTFKTCKEYLRPLKKFLRKLHLPRDL 100
>AL390866-4|CAI12710.1| 389|Homo sapiens novel protein protein.
Length = 389
Score = 30.3 bits (65), Expect = 9.9
Identities = 19/83 (22%), Positives = 37/83 (44%)
Frame = -2
Query: 706 EIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYLNEILALGTQNEGENSSKEDALD 527
EIQ K ++E P V+ G +++ EK++E + E + +E + D
Sbjct: 281 EIQEDKHTGKLEKPRPSVSHGRAQLLRKSAEKIEETVSDSSSESEEDEEPPDHRQEASAD 340
Query: 526 DSITYETIQEMAKTMGQGDRNHD 458
Y IQ++ K + Q + + +
Sbjct: 341 LPSEYWQIQKLVKYLKQKETSQN 363
>AK001238-1|BAA91574.1| 352|Homo sapiens protein ( Homo sapiens
cDNA FLJ10376 fis, clone NT2RM2001982. ).
Length = 352
Score = 30.3 bits (65), Expect = 9.9
Identities = 19/83 (22%), Positives = 37/83 (44%)
Frame = -2
Query: 706 EIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYLNEILALGTQNEGENSSKEDALD 527
EIQ K ++E P V+ G +++ EK++E + E + +E + D
Sbjct: 244 EIQEDKHTGKLEKPRPSVSHGRAQLLRKSAEKIEETVSDSSSESEEDEEPPDHRQEASAD 303
Query: 526 DSITYETIQEMAKTMGQGDRNHD 458
Y IQ++ K + Q + + +
Sbjct: 304 LPSEYWQIQKLVKYLKQKETSQN 326
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,581,831
Number of Sequences: 237096
Number of extensions: 2233938
Number of successful extensions: 5340
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5340
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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