Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11i09
(893 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81074-3|CAB03039.2| 352|Caenorhabditis elegans Hypothetical pr... 208 3e-54
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 32 0.64
U23484-5|AAK93844.1| 590|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z81073-1|CAB03029.1| 645|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 28 7.8
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 28 7.8
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 28 7.8
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 28 7.8
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 7.8
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 28 7.8
>Z81074-3|CAB03039.2| 352|Caenorhabditis elegans Hypothetical
protein F32B6.3 protein.
Length = 352
Score = 208 bits (509), Expect = 3e-54
Identities = 106/262 (40%), Positives = 166/262 (63%), Gaps = 6/262 (2%)
Frame = -2
Query: 772 PRNEVIKRLRERGHPILLFAETEIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYL 593
P +E+ RLR+R HPI+LF ET+I KRL ++E+ +P++N G+ N+ Q AM+ + + +
Sbjct: 86 PMSEIQTRLRQRNHPIMLFGETDIDVRKRLHQLELAQPDLNEGWENELQTAMKVIGKE-M 144
Query: 592 NEILALGTQNEGENSSKED-ALDDSI---TYETIQEMAKTMG-QGDRNHDMNVIMTLLQF 428
++ + GT +++++ D AL ++ I+ + + D D ++I+++ ++
Sbjct: 145 DKAVVEGT---ADSATRHDIALPQGYEEDNWKNIEHNSTLLSVDDDLKRDCDIILSICRY 201
Query: 427 LLKLWGQQLSSAAAGQKAAIKHKMTRATYTQTQVYLKPLMRKLKKKNLPEDICDSLTEIT 248
+L W + L+ K + A + QT ++LK LM +++ N DI L +I
Sbjct: 202 ILARWAKDLNDRPLDVKKTAQGMHEAAHHKQTMMHLKSLMTSMERYNCNNDIRHHLAKIC 261
Query: 247 KHL-LDRNYIMASDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKNVAHVMNDETQRK 71
+ L +DRNY+ A++AY++MAIGNAPWP+GVT GIH R G K + N+AHV+NDETQRK
Sbjct: 262 RLLVIDRNYLEANNAYMEMAIGNAPWPVGVTRSGIHQRPGSAKSYVSNIAHVLNDETQRK 321
Query: 70 YIQALKRLMTKCQEYFPTDPSR 5
YIQA KRLMTK QEYFPTDPS+
Sbjct: 322 YIQAFKRLMTKMQEYFPTDPSK 343
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
protein W02B8.2 protein.
Length = 1256
Score = 31.9 bits (69), Expect = 0.64
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = -2
Query: 640 RNDFQEAMEKVDEAYLNEILALGTQNEGENSSKEDALDDSITYETIQEMAKTMGQ 476
R+DF + K+ E ++E+ + E E S KE+ + +T E +QE+ KT+ Q
Sbjct: 257 RDDFLQFSAKIIEETMSELKLKNARLERELSEKEELV--KVTKEELQELQKTVTQ 309
>U23484-5|AAK93844.1| 590|Caenorhabditis elegans Hypothetical
protein EEED8.16 protein.
Length = 590
Score = 28.7 bits (61), Expect = 5.9
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 9/116 (7%)
Frame = -2
Query: 646 GFRNDFQEAMEKVDEAYLNEILALG---TQNEGENSSKEDALDDSITYETIQEMAKTMGQ 476
G R+D ++ M K+++ ++ L T+ E S + LDD++T + E T
Sbjct: 425 GLRHDMEQTMSKMEKTAYAQVENLEHQLTERSTELKSLKGDLDDTVTARKVAEKRATQTN 484
Query: 475 GDRN------HDMNVIMTLLQFLLKLWGQQLSSAAAGQKAAIKHKMTRATYTQTQV 326
N D I +L+ ++W Q+ QK A + Q+QV
Sbjct: 485 EKVNKLANELKDEREINQMLRKDQQVWKGQVEKLIESQKTARTEYEKKIEDLQSQV 540
>Z81073-1|CAB03029.1| 645|Caenorhabditis elegans Hypothetical
protein F30F8.1 protein.
Length = 645
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/79 (24%), Positives = 37/79 (46%)
Frame = -2
Query: 721 LFAETEIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYLNEILALGTQNEGENSSK 542
L A Q + L R E+ E +N+G N F + ++++ + ++GT E + +
Sbjct: 275 LTARLRSQEREELLRRELNELSMNQGTSNQFDQ--QQMNSRVIPN--SMGTLWESSETGQ 330
Query: 541 EDALDDSITYETIQEMAKT 485
+ S T + Q+M +T
Sbjct: 331 QGGTSSSSTVQAFQQMNQT 349
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = -2
Query: 751 RLRERGHPILLFAETEIQSFKRLRRIEIQEPEVNRG--FRNDFQEAMEKVDEAYLNEILA 578
RL + P+L + +R + +++ ++ R F +D+++ MEK+DE E L
Sbjct: 846 RLLTKVKPLLEVTNKDELIAEREQELKVTAEKLRRSEVFISDYKQQMEKMDE----ERLV 901
Query: 577 LGTQNEGENSSKEDALDD 524
L T+ + E+S + + ++
Sbjct: 902 LKTRLDAESSERAEIFEE 919
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = -2
Query: 751 RLRERGHPILLFAETEIQSFKRLRRIEIQEPEVNRG--FRNDFQEAMEKVDEAYLNEILA 578
RL + P+L + +R + +++ ++ R F +D+++ MEK+DE E L
Sbjct: 846 RLLTKVKPLLEVTNKDELIAEREQELKVTAEKLRRSEVFISDYKQQMEKMDE----ERLV 901
Query: 577 LGTQNEGENSSKEDALDD 524
L T+ + E+S + + ++
Sbjct: 902 LKTRLDAESSERAEIFEE 919
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical protein
F07A11.6e protein.
Length = 2101
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/89 (19%), Positives = 43/89 (48%)
Frame = -2
Query: 706 EIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYLNEILALGTQNEGENSSKEDALD 527
E++ KRL + + R++ ++ EKV + E L +G++S + D+
Sbjct: 807 EMERAKRLEDERQERKREKKKERDERKKEKEKVRKKAEKEKLKKKKHRKGDSSDESDSDS 866
Query: 526 DSITYETIQEMAKTMGQGDRNHDMNVIMT 440
+ +++ K M Q +++H + ++++
Sbjct: 867 NDELDLDVRKSTKEMTQEEKDHQLALLLS 895
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/89 (19%), Positives = 43/89 (48%)
Frame = -2
Query: 706 EIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYLNEILALGTQNEGENSSKEDALD 527
E++ KRL + + R++ ++ EKV + E L +G++S + D+
Sbjct: 1098 EMERAKRLEDERQERKREKKKERDERKKEKEKVRKKAEKEKLKKKKHRKGDSSDESDSDS 1157
Query: 526 DSITYETIQEMAKTMGQGDRNHDMNVIMT 440
+ +++ K M Q +++H + ++++
Sbjct: 1158 NDELDLDVRKSTKEMTQEEKDHQLALLLS 1186
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/89 (19%), Positives = 43/89 (48%)
Frame = -2
Query: 706 EIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYLNEILALGTQNEGENSSKEDALD 527
E++ KRL + + R++ ++ EKV + E L +G++S + D+
Sbjct: 1113 EMERAKRLEDERQERKREKKKERDERKKEKEKVRKKAEKEKLKKKKHRKGDSSDESDSDS 1172
Query: 526 DSITYETIQEMAKTMGQGDRNHDMNVIMT 440
+ +++ K M Q +++H + ++++
Sbjct: 1173 NDELDLDVRKSTKEMTQEEKDHQLALLLS 1201
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/89 (19%), Positives = 43/89 (48%)
Frame = -2
Query: 706 EIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYLNEILALGTQNEGENSSKEDALD 527
E++ KRL + + R++ ++ EKV + E L +G++S + D+
Sbjct: 1113 EMERAKRLEDERQERKREKKKERDERKKEKEKVRKKAEKEKLKKKKHRKGDSSDESDSDS 1172
Query: 526 DSITYETIQEMAKTMGQGDRNHDMNVIMT 440
+ +++ K M Q +++H + ++++
Sbjct: 1173 NDELDLDVRKSTKEMTQEEKDHQLALLLS 1201
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/89 (19%), Positives = 43/89 (48%)
Frame = -2
Query: 706 EIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYLNEILALGTQNEGENSSKEDALD 527
E++ KRL + + R++ ++ EKV + E L +G++S + D+
Sbjct: 807 EMERAKRLEDERQERKREKKKERDERKKEKEKVRKKAEKEKLKKKKHRKGDSSDESDSDS 866
Query: 526 DSITYETIQEMAKTMGQGDRNHDMNVIMT 440
+ +++ K M Q +++H + ++++
Sbjct: 867 NDELDLDVRKSTKEMTQEEKDHQLALLLS 895
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/89 (19%), Positives = 43/89 (48%)
Frame = -2
Query: 706 EIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYLNEILALGTQNEGENSSKEDALD 527
E++ KRL + + R++ ++ EKV + E L +G++S + D+
Sbjct: 1098 EMERAKRLEDERQERKREKKKERDERKKEKEKVRKKAEKEKLKKKKHRKGDSSDESDSDS 1157
Query: 526 DSITYETIQEMAKTMGQGDRNHDMNVIMT 440
+ +++ K M Q +++H + ++++
Sbjct: 1158 NDELDLDVRKSTKEMTQEEKDHQLALLLS 1186
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/89 (19%), Positives = 43/89 (48%)
Frame = -2
Query: 706 EIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYLNEILALGTQNEGENSSKEDALD 527
E++ KRL + + R++ ++ EKV + E L +G++S + D+
Sbjct: 1113 EMERAKRLEDERQERKREKKKERDERKKEKEKVRKKAEKEKLKKKKHRKGDSSDESDSDS 1172
Query: 526 DSITYETIQEMAKTMGQGDRNHDMNVIMT 440
+ +++ K M Q +++H + ++++
Sbjct: 1173 NDELDLDVRKSTKEMTQEEKDHQLALLLS 1201
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/89 (19%), Positives = 43/89 (48%)
Frame = -2
Query: 706 EIQSFKRLRRIEIQEPEVNRGFRNDFQEAMEKVDEAYLNEILALGTQNEGENSSKEDALD 527
E++ KRL + + R++ ++ EKV + E L +G++S + D+
Sbjct: 1113 EMERAKRLEDERQERKREKKKERDERKKEKEKVRKKAEKEKLKKKKHRKGDSSDESDSDS 1172
Query: 526 DSITYETIQEMAKTMGQGDRNHDMNVIMT 440
+ +++ K M Q +++H + ++++
Sbjct: 1173 NDELDLDVRKSTKEMTQEEKDHQLALLLS 1201
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = -2
Query: 751 RLRERGHPILLFAETEIQSFKRLRRIEIQEPEVNRG--FRNDFQEAMEKVDEAYLNEILA 578
RL + P+L + +R + +++ ++ R F +D+++ MEK+DE E L
Sbjct: 846 RLLTKVKPLLEVTNKDELIAEREQELKVTAEKLRRSEVFISDYKQQMEKMDE----ERLV 901
Query: 577 LGTQNEGENSSKEDALDD 524
L T+ + E+S + + ++
Sbjct: 902 LKTRLDAESSERAEIFEE 919
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,726,033
Number of Sequences: 27780
Number of extensions: 376783
Number of successful extensions: 1191
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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