Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11i09
(893 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 26 0.40
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 24 2.2
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 23 3.8
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 22 6.6
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 22 6.6
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 22 6.6
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 22 6.6
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 22 6.6
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 6.6
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 22 8.7
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 26.2 bits (55), Expect = 0.40
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 744 EKEVIQYYCLLKLKFSPLRD*EELKFKNQKLTGASGMTSKKRWRKSMK 601
EKE + + ++S R+ E+ +KN++ G TSK+R R M+
Sbjct: 247 EKEKLLEERTSRKRYSRSREREQKSYKNEREYRKYGKTSKERSRDRME 294
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 23.8 bits (49), Expect = 2.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 744 EKEVIQYYCLLKLKFSPLRD*EELKFKNQKLTGASGMTSKKRWR 613
EKE + + ++S R+ E+ +KN++ G TSK+R R
Sbjct: 258 EKEKLLEERTSRERYSRSREREQKSYKNEREYRKYGETSKERSR 301
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 23.0 bits (47), Expect = 3.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 503 NGFICNRIIKCIFFGR 550
+GF+C R K FFGR
Sbjct: 293 SGFLCERHQKRYFFGR 308
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 705 KFSPLRD*EELKFKNQKLTGASGMTSKKRWR 613
++S R+ E+ +KN++ G TSK+R R
Sbjct: 38 RYSRSREREQKLYKNEREYRKYGETSKERSR 68
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 705 KFSPLRD*EELKFKNQKLTGASGMTSKKRWR 613
++S R+ E+ +KN++ G TSK+R R
Sbjct: 38 RYSRSREREQKLYKNEREYRKYGETSKERSR 68
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 705 KFSPLRD*EELKFKNQKLTGASGMTSKKRWR 613
++S R+ E+ +KN++ G TSK+R R
Sbjct: 38 RYSRSREREQKLYKNEREYRKYGETSKERSR 68
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 705 KFSPLRD*EELKFKNQKLTGASGMTSKKRWR 613
++S R+ E+ +KN++ G TSK+R R
Sbjct: 38 RYSRSREREQKLYKNEREYRKYGETSKERSR 68
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 705 KFSPLRD*EELKFKNQKLTGASGMTSKKRWR 613
++S R+ E+ +KN++ G TSK+R R
Sbjct: 271 RYSRSREREQKLYKNEREYRKYGETSKERSR 301
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 705 KFSPLRD*EELKFKNQKLTGASGMTSKKRWR 613
++S R+ E+ +KN++ G TSK+R R
Sbjct: 271 RYSRSREREQKLYKNEREYRKYGETSKERSR 301
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 705 KFSPLRD*EELKFKNQKLTGASGMTSKKRWR 613
++S R+ E+ +KN++ G TSK+R R
Sbjct: 271 RYSRSREREQKLYKNEREYRKYGETSKERSR 301
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 705 KFSPLRD*EELKFKNQKLTGASGMTSKKRWR 613
++S R+ E+ +KN++ G TSK+R R
Sbjct: 271 RYSRSREREQKLYKNEREYRKYGETSKERSR 301
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 705 KFSPLRD*EELKFKNQKLTGASGMTSKKRWR 613
++S R+ E+ +KN++ G TSK+R R
Sbjct: 271 RYSRSREREQKLYKNEREYRKYGETSKERSR 301
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 705 KFSPLRD*EELKFKNQKLTGASGMTSKKRWR 613
++S R+ E+ +KN++ G TSK+R R
Sbjct: 260 RYSRSREREQKLYKNEREYRKYGETSKERSR 290
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 8.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 744 EKEVIQYYCLLKLKFSPLRD*EELKFKNQKLTGASGMTSKKRWR 613
EKE + + ++S R+ E+ +KN+K TSK+R R
Sbjct: 25 EKEKLLEERTSRKRYSRSREREQNSYKNEKEYRKYRETSKERSR 68
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,169
Number of Sequences: 438
Number of extensions: 4548
Number of successful extensions: 44
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -