Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i08
         (812 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075212-1|AAL68079.1|  473|Drosophila melanogaster AT15052p pro...    29   10.0 
AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like...    29   10.0 
AE014134-2786|AAF53572.2|  473|Drosophila melanogaster CG13280-P...    29   10.0 
AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA...    29   10.0 

>AY075212-1|AAL68079.1|  473|Drosophila melanogaster AT15052p
           protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 724 PTHNNTCIIVCYV*SVQVSESMDYIVDGATELDDFSSKYSI 602
           PTH +  + +CY    +  E  + I+ G+TE DDFS   S+
Sbjct: 361 PTHYHNRLGMCY----EAEEVRNCILKGSTESDDFSHNESL 397


>AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like
            kinetochore motorprotein CENP-meta protein.
          Length = 2244

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 38   QNSSEMDRVNFVKIKIHSEIMKINKSHSLT 127
            Q   E+D+    K+ + SEI K N  HS T
Sbjct: 1516 QQVLELDKCRLEKLSLESEIQKANSEHSCT 1545


>AE014134-2786|AAF53572.2|  473|Drosophila melanogaster CG13280-PA
           protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 724 PTHNNTCIIVCYV*SVQVSESMDYIVDGATELDDFSSKYSI 602
           PTH +  + +CY    +  E  + I+ G+TE DDFS   S+
Sbjct: 361 PTHYHNRLGMCY----EAEEVRNCILKGSTESDDFSHNESL 397


>AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA
            protein.
          Length = 2013

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 38   QNSSEMDRVNFVKIKIHSEIMKINKSHSLT 127
            Q   E+D+    K+ + SEI K N  HS T
Sbjct: 1516 QQVLELDKCRLEKLSLESEIQKANSEHSCT 1545


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,971,683
Number of Sequences: 53049
Number of extensions: 595443
Number of successful extensions: 1186
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3818998872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)