Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i08
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-2|AAL02483.1|  460|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z81550-1|CAB04480.1|  269|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>U23139-2|AAL02483.1|  460|Caenorhabditis elegans Hypothetical
           protein F13H8.11 protein.
          Length = 460

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 71  VKIKIHSEIMKINKSHSLTHGEPGPDRHTCTCLYSLNR*E 190
           + +KIHS+  K++K    +H      R TC+C++ LN  E
Sbjct: 235 INVKIHSQAHKLSKFCEFSH------RKTCSCIFELNEKE 268


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 349  KSILLILTKNLTIPVLCINTKKYSYIILKYITDKLVIYFNKVKLLNNL 492
            K+I+L L KN++  ++   + K S+   KYI+D   ++  KV    NL
Sbjct: 3259 KTIVLKLIKNISAKLIVFQSFKLSFSTKKYISD---LFSKKVTFFYNL 3303


>Z81550-1|CAB04480.1|  269|Caenorhabditis elegans Hypothetical
           protein F55F3.1 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 223 DTPVMCNANLLTNQNKIRLFYLYTMN 300
           DTPV C+ N+L   + + L +LY ++
Sbjct: 217 DTPVQCDPNVLPEPDHVMLNHLYALS 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,605,494
Number of Sequences: 27780
Number of extensions: 332336
Number of successful extensions: 777
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)