Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11i06
(864 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70753-10|CAD44125.1| 296|Caenorhabditis elegans Hypothetical p... 87 2e-17
Z70753-1|CAD44126.1| 296|Caenorhabditis elegans Hypothetical pr... 87 2e-17
Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical p... 71 1e-12
AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical ... 51 9e-07
U28740-4|AAA68319.2| 276|Caenorhabditis elegans Temporarily ass... 35 0.065
U55366-7|AAA97985.2| 323|Caenorhabditis elegans Serpentine rece... 31 0.80
U39674-2|AAY86211.1| 94|Caenorhabditis elegans Hypothetical pr... 31 1.4
AF067944-5|AAC17673.1| 335|Caenorhabditis elegans Seven tm rece... 29 3.2
Z72503-4|CAA96595.1| 354|Caenorhabditis elegans Hypothetical pr... 29 4.3
AY008140-1|AAG32093.1| 354|Caenorhabditis elegans heterotrimeri... 29 4.3
AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm rec... 29 4.3
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z81553-9|CAB04500.2| 663|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z70307-6|CAA94332.1| 210|Caenorhabditis elegans Hypothetical pr... 29 5.7
M38251-1|AAA28059.1| 354|Caenorhabditis elegans G-o protein alp... 29 5.7
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 29 5.7
AL031627-13|CAA20964.1| 304|Caenorhabditis elegans Hypothetical... 29 5.7
U40061-1|AAA81148.2| 573|Caenorhabditis elegans Hypothetical pr... 28 7.5
AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical ... 28 7.5
Z74041-1|CAA98520.1| 255|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z48582-4|CAI46606.1| 349|Caenorhabditis elegans Hypothetical pr... 28 9.9
AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical ... 28 9.9
AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effe... 28 9.9
>Z70753-10|CAD44125.1| 296|Caenorhabditis elegans Hypothetical
protein F40F9.1a protein.
Length = 296
Score = 87.0 bits (206), Expect = 2e-17
Identities = 56/249 (22%), Positives = 118/249 (47%), Gaps = 4/249 (1%)
Frame = -1
Query: 765 YGAQ-NQNDWGMSGGNAFDNGAPPLEYDPKTRNDXXXXXXXXXXIMLMC-TASFTVLVFI 592
+GA NQ + G GG +G ++ KT +++C A+ TV+ ++
Sbjct: 48 HGAMFNQMENGQHGGGDNPDGKYSFQFSDKTVRAAFVRKVFSLVFIMLCIVAAVTVIPWV 107
Query: 591 TPD-MKVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLVLAVIGMSTIVSF 415
D M++ + L +G + + LS V C RK P N++ + + S +
Sbjct: 108 HDDTMRMVRRNSALYLGSYVIFFVTYLSLVC-CEGVRRKFPVNLIVTGIFTLATSVMTMV 166
Query: 414 ITVHYNTEILMYAMLATAVVVFVCILLAC-SNFDFTKWFIYVIVISTAFSVIVMIIGVTT 238
I+ H++ +++ A+ F +++A + FD T Y+++IS F +++ + +
Sbjct: 167 ISAHHDANVVLLALAICIGCTFSIVIVASQTKFDLTAHMGYILIISMCFMFFGLVVVICS 226
Query: 237 LITNTHMKSLDLGLLIVGTLINVVILVLELQTILGGRSVELHEDDYAMGAFLLYISIVDI 58
+ +K L + + G LI ++ L L++Q ++GG+ E+ ++Y + ++I IV +
Sbjct: 227 MFFK--IKFLMMVYALGGALIMMLYLFLDVQMLMGGKKYEISPEEYIFASVQIFIDIVQM 284
Query: 57 FLQFVQILG 31
F + + G
Sbjct: 285 FWFLLSLFG 293
>Z70753-1|CAD44126.1| 296|Caenorhabditis elegans Hypothetical
protein F40F9.1b protein.
Length = 296
Score = 87.0 bits (206), Expect = 2e-17
Identities = 56/249 (22%), Positives = 118/249 (47%), Gaps = 4/249 (1%)
Frame = -1
Query: 765 YGAQ-NQNDWGMSGGNAFDNGAPPLEYDPKTRNDXXXXXXXXXXIMLMC-TASFTVLVFI 592
+GA NQ + G GG +G ++ KT +++C A+ TV+ ++
Sbjct: 48 HGAMFNQMENGQHGGGDNPDGKYSFQFSDKTVRAAFVRKVFSLVFIMLCIVAAVTVIPWV 107
Query: 591 TPD-MKVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLVLAVIGMSTIVSF 415
D M++ + L +G + + LS V C RK P N++ + + S +
Sbjct: 108 HDDTMRMVRRNSALYLGSYVIFFVTYLSLVC-CEGVRRKFPVNLIVTGIFTLATSVMTMV 166
Query: 414 ITVHYNTEILMYAMLATAVVVFVCILLAC-SNFDFTKWFIYVIVISTAFSVIVMIIGVTT 238
I+ H++ +++ A+ F +++A + FD T Y+++IS F +++ + +
Sbjct: 167 ISAHHDANVVLLALAICIGCTFSIVIVASQTKFDLTAHMGYILIISMCFMFFGLVVVICS 226
Query: 237 LITNTHMKSLDLGLLIVGTLINVVILVLELQTILGGRSVELHEDDYAMGAFLLYISIVDI 58
+ +K L + + G LI ++ L L++Q ++GG+ E+ ++Y + ++I IV +
Sbjct: 227 MFFK--IKFLMMVYALGGALIMMLYLFLDVQMLMGGKKYEISPEEYIFASVQIFIDIVQM 284
Query: 57 FLQFVQILG 31
F + + G
Sbjct: 285 FWFLLSLFG 293
>Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical
protein F40F9.2 protein.
Length = 244
Score = 70.9 bits (166), Expect = 1e-12
Identities = 47/203 (23%), Positives = 93/203 (45%), Gaps = 2/203 (0%)
Frame = -1
Query: 633 MLMCTASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCL 454
M TA+F V+ ++ + + + V I ++ ++ + C R+ P NI+ L
Sbjct: 42 MFAITAAFCVIPMVSEPFQDWVKNNFWVYFIAIIVFLVVAIALSCCGNLRRQFPVNIILL 101
Query: 453 VLAVIGMSTIVSFITVHYNTEILMYAMLATAVVVFVCILLAC-SNFDFT-KWFIYVIVIS 280
+ + + + F+T YN + ++ + T V I+ + + D T K I ++
Sbjct: 102 TIFTLSAAVMTMFVTACYNVQSVLICLCITTVCSGSVIIFSMKTKSDLTSKMGIAFMLSM 161
Query: 279 TAFSVIVMIIGVTTLITNTHMKSLDLGLLIVGTLINVVILVLELQTILGGRSVELHEDDY 100
FS + + T + S+ GL L+ + L +++Q ++GGR EL +DY
Sbjct: 162 VLFSFGIFALIFTLAFNWQFLYSVYSGL---AALLMMFYLAIDVQLLMGGRKYELSPEDY 218
Query: 99 AMGAFLLYISIVDIFLQFVQILG 31
A +++ I++IFL + I G
Sbjct: 219 IFAAMEIFLDILNIFLMLLNIFG 241
>AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical
protein Y42H9AR.2 protein.
Length = 133
Score = 51.2 bits (117), Expect = 9e-07
Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Frame = -1
Query: 417 FITVHYNTE-ILMYAMLATAVVVFVCILLACSNFDFTKWFIYVIVISTAFSVIVMIIGVT 241
FIT Y+ + +L+ ++ T + + A + D T ++ + ++ +
Sbjct: 4 FITATYSADAVLISLLITTGCSASIILFAATTKKDLTSCLGVAFILGICLMLFGLMACIF 63
Query: 240 TLITNTHMKSLDLGLLIVGTLINVVILVLELQTILGGRSVELHEDDYAMGAFLLYISIVD 61
+ N L + ++G L+ + L +++Q I+GGR VE+ ++Y A +++ I+
Sbjct: 64 CIFLNWQF--LYIVYAVLGALLCMFYLAIDIQLIMGGRRVEISPEEYIFAATHVFVDILG 121
Query: 60 IFLQFVQILGILGD 19
+FL ILG++G+
Sbjct: 122 MFLN---ILGVVGN 132
>U28740-4|AAA68319.2| 276|Caenorhabditis elegans Temporarily
assigned gene nameprotein 132 protein.
Length = 276
Score = 35.1 bits (77), Expect = 0.065
Identities = 37/200 (18%), Positives = 89/200 (44%), Gaps = 1/200 (0%)
Frame = -1
Query: 630 LMCTASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLV 451
L+ T ++ P+ Q+ ++ P ++ I L +++ AR++P N V L
Sbjct: 85 LLFTIGICAAIYNIPNSNQLLQKHAWIV-FPNLLGSIAL--IIALHVYAREVPLNYVLLA 141
Query: 450 LAVIGMSTIVSFITVHYNTEILMYAMLATAVVVFVCILLACSNF-DFTKWFIYVIVISTA 274
+ + + + ++++ A + T +VV N DF+ + + +
Sbjct: 142 AFTAVQAVTMGCVVTLFEAKVVLEAAVITGLVVASLFAYTLQNKRDFSVGYASM----GS 197
Query: 273 FSVIVMIIGVTTLITNTHMKSLDLGLLIVGTLINVVILVLELQTILGGRSVELHEDDYAM 94
+++ G+ + + +++ + + G + V+LV++L I+ S E DY
Sbjct: 198 LLCVLLWAGIFQMFFMS--PAVNFVINVFGAGLFCVLLVIDLDMIMYRFSPE----DYIC 251
Query: 93 GAFLLYISIVDIFLQFVQIL 34
LY+ I+++F++ +QI+
Sbjct: 252 ACVSLYMDILNLFIRILQIV 271
>U55366-7|AAA97985.2| 323|Caenorhabditis elegans Serpentine
receptor, class x protein74 protein.
Length = 323
Score = 31.5 bits (68), Expect = 0.80
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -1
Query: 555 LVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLVLAVIGMST-IVSFITVHYNTEILMY 379
L++ IP IL L + S A K N++CLV AV + +V+F+ + T +L Y
Sbjct: 13 LIVAIPG-ILFSSLIVYLYVSGFAEKTSFNVICLVRAVNNIIVLVVNFLIFLFPTLLLSY 71
Query: 378 AMLATAV 358
+++ +
Sbjct: 72 NYMSSTL 78
>U39674-2|AAY86211.1| 94|Caenorhabditis elegans Hypothetical
protein C06E2.9 protein.
Length = 94
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 379 IHQDLRVVMHRDERNNCGHSYNR*NKTHNVARHFSGTLRTRHHE 510
+H+ R V H+ N GH ++R +K NV+RHF +HH+
Sbjct: 43 MHRFRRHVEHQKHSLNDGHLHSRNSK--NVSRHFVNDGHAQHHK 84
>AF067944-5|AAC17673.1| 335|Caenorhabditis elegans Seven tm
receptor protein 67 protein.
Length = 335
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = -1
Query: 381 YAMLATA-VVVFVCILLACSNFD-FTKWFIYVIVISTAFSVIVMIIGVTTLITNTHMKSL 208
YA +T V++++ + A F + K IY+ V+ST+FS + MI+ T N + S
Sbjct: 16 YASFSTNFVLIWITVFHAKKLFGAYKKMIIYISVLSTSFSGLEMIMKPFTHNYNGALLSF 75
Query: 207 DLGLLIVGTLINVVILVLELQTIL 136
+L L + I + +++ Q L
Sbjct: 76 NLCELNIPLKIRQIFILIWSQFYL 99
>Z72503-4|CAA96595.1| 354|Caenorhabditis elegans Hypothetical
protein C26C6.2 protein.
Length = 354
Score = 29.1 bits (62), Expect = 4.3
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 2/115 (1%)
Frame = -3
Query: 658 FCVHYSFYNVNVHSIIHRSGVYHARYESVFSKDRLSN--WHTSHDFNYWAEFRDVLFGVC 485
FCV S Y+ ++H + +ES+ D + N W T + +D+
Sbjct: 224 FCVAMSEYD----QVLHEDETTNRMHESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 279
Query: 484 QKNALQHCVSCFSGYRNVHNCFVHHGALQHGDLDVCNAGDRCRCVCLYITGLFQF 320
+K+ L C +SG ++ H + A N C C T QF
Sbjct: 280 KKSPLTICFPEYSGRQDYHEASAYIQAQFEAKNKSANKEIYCHMTCATDTTNIQF 334
>AY008140-1|AAG32093.1| 354|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 354
Score = 29.1 bits (62), Expect = 4.3
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 2/115 (1%)
Frame = -3
Query: 658 FCVHYSFYNVNVHSIIHRSGVYHARYESVFSKDRLSN--WHTSHDFNYWAEFRDVLFGVC 485
FCV S Y+ ++H + +ES+ D + N W T + +D+
Sbjct: 224 FCVAMSEYD----QVLHEDETTNRMHESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 279
Query: 484 QKNALQHCVSCFSGYRNVHNCFVHHGALQHGDLDVCNAGDRCRCVCLYITGLFQF 320
+K+ L C +SG ++ H + A N C C T QF
Sbjct: 280 KKSPLTICFPEYSGRQDYHEASAYIQAQFEAKNKSANKEIYCHMTCATDTTNIQF 334
>AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm
receptor protein 82 protein.
Length = 362
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = -1
Query: 561 IGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLVLAVIGMSTIVSFITVHYN----- 397
+ L+ + +++II S S M + + + I + + S++ YN
Sbjct: 18 LSLLFNLVLLVIIIKFSRPEYGSYKLLMMVMATLYAIYSAIEVIILPSYLVFEYNYLLYT 77
Query: 396 TEILMYAMLATAVVVFVCILLACSNFDFTKWFIY 295
T+ + Y +L+ ++V C + AC + FIY
Sbjct: 78 TQFVEYQLLSQILIVTFCSIFACMQVVLSTQFIY 111
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 166 NNIYQCADNQKAEVQRLH 219
NNIY+CA+NQK + + H
Sbjct: 474 NNIYKCANNQKTQFEDRH 491
>Z81553-9|CAB04500.2| 663|Caenorhabditis elegans Hypothetical
protein F56H6.11 protein.
Length = 663
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -1
Query: 393 EILMYAMLATAVVVFVCILLACSNFDFTKWFIYVIVISTAFSVIVMIIGVTTLITNTHMK 214
+ L+ A LA ++ + + I F KW++ + S V+V+++ LI HM
Sbjct: 328 QFLLVAALAASIALAIIIFET-----FEKWYLKISTSSLGILVMVLLLSNLALINKDHMF 382
Query: 213 S 211
S
Sbjct: 383 S 383
>Z70307-6|CAA94332.1| 210|Caenorhabditis elegans Hypothetical
protein C39E9.6 protein.
Length = 210
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 167 LYWYWSFRPF*VVDLWNSTRTITRWVHSYSTF 72
LYW WS PF +D + T+ W H + F
Sbjct: 90 LYWEWSGDPFSDLDKFGKIATVA-WDHEFEQF 120
>M38251-1|AAA28059.1| 354|Caenorhabditis elegans G-o protein alpha
subunit protein.
Length = 354
Score = 28.7 bits (61), Expect = 5.7
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 2/115 (1%)
Frame = -3
Query: 658 FCVHYSFYNVNVHSIIHRSGVYHARYESVFSKDRLSN--WHTSHDFNYWAEFRDVLFGVC 485
FCV S Y+ ++H + +ES+ D + N W T + +D+
Sbjct: 224 FCVAMSEYD----QLLHEDETTNRMHESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 279
Query: 484 QKNALQHCVSCFSGYRNVHNCFVHHGALQHGDLDVCNAGDRCRCVCLYITGLFQF 320
+K+ L C +SG ++ H + A N C C T QF
Sbjct: 280 KKSPLTICFPEYSGRQDYHEASAYIQAQFEAKNKSANKEIYCHMTCATDTTNIQF 334
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 166 NNIYQCADNQKAEVQRLH 219
NNIY+CA+NQK + + H
Sbjct: 474 NNIYKCANNQKTQFEDRH 491
>AL031627-13|CAA20964.1| 304|Caenorhabditis elegans Hypothetical
protein Y102A5C.23 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = -1
Query: 384 MYAMLATAVVVFVCILLACSNFDFTKWFIYVIVISTAFSVIVMIIGVTTLITNTHMKSLD 205
M + ++ V VC++ + T FIY IV S + +I+ ++ L N ++
Sbjct: 211 MVVLTFKSIQVLVCLMTNHNGISLTSLFIYAIVFSDIITT-PLIVQMSYLSCNKRNMNVL 269
Query: 204 LGLLIVGTLINVV 166
L + L NV+
Sbjct: 270 LSTISARKLFNVL 282
>U40061-1|AAA81148.2| 573|Caenorhabditis elegans Hypothetical
protein ZK563.2 protein.
Length = 573
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 318 DFTKWFIYVIVISTAFSVI-VMIIGVTTLITNTHMKSLDLGLLIVGTLINVVIL 160
D +WFI V+ IST F +I IIG+T L N + + L+I T + +L
Sbjct: 439 DHYRWFI-VVFISTVFLIIPFTIIGLTLLPDNVIVIVFIIILIIAITCCFICVL 491
>AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical
protein Y32F6A.4 protein.
Length = 519
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = -1
Query: 465 IVCLVLAVIGMSTIVSFITVHYNTEILMYAMLATAVVVFVCILLAC---SNFDFTKWFIY 295
++ +V ++ I++ I T I ++ ++V C+L C S DF W +
Sbjct: 154 MISVVYLLLASKNIMNMIIAFSGTHISFCILI---LIVATCLLPLCFLKSPQDFW-WAVV 209
Query: 294 VIVISTAFSVIVMIIG 247
+ +++T+ +VI++I+G
Sbjct: 210 IAMMTTSAAVILIIVG 225
>Z74041-1|CAA98520.1| 255|Caenorhabditis elegans Hypothetical
protein T03F7.5 protein.
Length = 255
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = -1
Query: 465 IVCLVLAVIGMSTIV-SFITVHYNTEILMYAMLATAVVVF-VCILLACSNFDFTKWFIYV 292
I+ L+L + I SF+ Y+T I M+A L +++ + + +F +WF +
Sbjct: 160 ILVLILQLYNFYEIARSFL---YSTAIYMFAQLTCFCILWGAAVTGVMYSVEFHRWFFVI 216
Query: 291 IVISTAFSVIVMIIGV 244
+I T V I+G+
Sbjct: 217 SLIFTKSKVSSKILGM 232
>Z48582-4|CAI46606.1| 349|Caenorhabditis elegans Hypothetical
protein F27E5.8 protein.
Length = 349
Score = 27.9 bits (59), Expect = 9.9
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Frame = -1
Query: 555 LVIGIPAMILIIGLSFVMSCSEC-ARKMPCNIVCL--VLAVIGMSTIVSFITVHYNTEIL 385
LVIG+ I +IG F SC R + CN CL +L +G + I + + + +++
Sbjct: 40 LVIGVLENIFMIGAVFSTSCLHLNLRILICN-CCLGFILMAVGRAMIAVPLCIAHLRDVM 98
Query: 384 MYAMLATAVVVFVCILLACSNFDFTK----WFIYVIVI 283
A L ++ A ++ WFI + +I
Sbjct: 99 RGASLLMRCIIHRLTRFAFHSYSLCSKEPLWFIPMFMI 136
>AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical
protein Y2H9A.1 protein.
Length = 898
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -3
Query: 184 HIDKCCYIGIGASDHSRW*ICGTPRGRLRDGCIPTLHFHSRYIP 53
HI CC IG S +S+ +C T GC + + IP
Sbjct: 302 HIKACCVIGCEKSSNSKTIMCKTCCRSFHSGCREVETLNGKPIP 345
>AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effect
sterile 4 protein.
Length = 898
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -3
Query: 184 HIDKCCYIGIGASDHSRW*ICGTPRGRLRDGCIPTLHFHSRYIP 53
HI CC IG S +S+ +C T GC + + IP
Sbjct: 302 HIKACCVIGCEKSSNSKTIMCKTCCRSFHSGCREVETLNGKPIP 345
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,954,778
Number of Sequences: 27780
Number of extensions: 524638
Number of successful extensions: 1535
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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