Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i04
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    32   0.12 
SPBC409.21 |sec66||ER protein translocation subcomplex subunit S...    29   1.1  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    28   1.9  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.9  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    27   2.5  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   7.7  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    26   7.7  
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    26   7.7  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    26   7.7  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -2

Query: 821 QVEISSEEYKEPSAASVVMSGVIQIQPKVILILNRL 714
           QVE  +EE +E  AA+   +GVIQ+Q  V+  L RL
Sbjct: 423 QVEDENEEEEEAIAAAENNNGVIQVQGSVVSFLERL 458


>SPBC409.21 |sec66||ER protein translocation subcomplex subunit
           Sec66 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 195 VSIAKTLEELQLKKEW-QFSYDA-NVLKENPQSSAIIDNNPKDAEA 64
           + IAKT   LQ    W QF +   N + EN +  +IIDN PKD ++
Sbjct: 119 MDIAKTANSLQ--PGWNQFIFQTCNEIIENEKIHSIIDNIPKDIDS 162


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -1

Query: 795 QGAFSGFGGHVRSYSDTTKSDSNSKQVMVQGENEEPVRVRRARPSDVPRV 646
           + A  GFGG   S  D T++     Q    GE+EE V       S + ++
Sbjct: 815 KAAGGGFGGKGLSRLDETRNAERKMQRKAYGEDEEDVETEAEAKSPLEKI 864


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -1

Query: 258 KSAIQRGRDVGFPLLRFDVNDVSIAKTLEELQLKKEWQFSYDANVLKENPQSSAIIDNNP 79
           KS  Q G    F      VN  S A   EE    K+ QF++D N+++ +    + ++  P
Sbjct: 174 KSESQLGESFSFNQDNTFVNYASPASITEEFVEPKDSQFNHDVNLMQGSAPGYSTVE--P 231

Query: 78  KDAEAS 61
           +D  AS
Sbjct: 232 EDNFAS 237


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
 Frame = -1

Query: 828 VISGRNFV--RRVQGAFSGFGGHVRSYSDTTKSDSNSKQV---MVQGENEEPVRVRRARP 664
           +I  R +V  R   G F    G  +++       S++KQ    +    N  P  + +  P
Sbjct: 169 IIGHRRYVWRRNENGRFQCVCGR-QNWRRPVNFASHAKQCPSFLAMDPNNIPPEINKVSP 227

Query: 663 SDVPRVIRFVREHVRQTWPEVSAPPGSNLVLCD 565
            D  R +   R   R+  P  + PPG+++   D
Sbjct: 228 HDDLRPLSDSRRRARRPHPSDTIPPGASMARSD 260


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 318 VYLIVPKNSLKSADIVQVLAKSAIQRGR 235
           V LI+P+ + + AD++  L  +A+Q+GR
Sbjct: 539 VTLILPETANRDADLIDRLEIAAMQQGR 566


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 222 PLLRFDVNDVSIAKTLEELQLKKEWQFSYDANVLKENPQSSAIIDN 85
           P   F+V ++SI+   E  Q  +  Q     N  KENPQ S  + N
Sbjct: 162 PFYLFEVKNLSISFHFESPQQVEPCQ---PVNPFKENPQKSGFVVN 204


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -1

Query: 327 ILQVYLIVPKNSLKSADIVQVLAKSAIQRGRDVGFPLLRFDVNDVSIAKTLEELQLKK 154
           ILQ  L V  N  K AD+  +L      +  D   P ++  V +V + K     ++ K
Sbjct: 3   ILQSILFVTGNKHKLADVKNILGDRFEIKNHDYDLPEIQGSVKEVVLEKCKAAAEIVK 60


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -1

Query: 732 SNSKQVMVQGENEE---PVRVRRARPSDVPRVIRFVREHVRQTWPEVSAP 592
           +++++    G N +   PV V RA    + R+I  + EH    WP   +P
Sbjct: 548 ASAEEAKESGNNNKYTRPVMVHRAILGSLERMIAILTEHYAGKWPFWMSP 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,252,253
Number of Sequences: 5004
Number of extensions: 65256
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)