Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i02
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    29   0.94 
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   2.9  
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    27   3.8  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.6  

>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 438 VGLQYCLRAHGVHQSSGVHI 379
           +G+  C+R  GVH+S GVH+
Sbjct: 44  LGVFICIRCSGVHRSLGVHV 63


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +1

Query: 28  LKAVLAQKLPPTTTKILSAFIHSVC--LTEEKQSTSSKTIVNM 150
           LKAVL +   PT  ++++ ++ ++   L EEK + +   ++N+
Sbjct: 349 LKAVLGEIKVPTNEEVIAKYVANIAAQLVEEKDNENESWVLNI 391


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 479 LEEKGISNEFAQKLSDFSTAYEHTAYINLLESISKF 372
           LEE+ I    +  +  F    E   YIN LES+ +F
Sbjct: 232 LEERKIDESLSSFIVSFGLTKELKEYINWLESVRQF 267


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 611 SADEYNDVFGIDEITLYK 558
           S  +Y DV+G+DE+ L++
Sbjct: 312 SISDYTDVYGVDELQLFE 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,920
Number of Sequences: 5004
Number of extensions: 63181
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)