Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i02
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0321 - 7223393-7224751,7225971-7226063,7227801-7227947           31   0.98 
03_06_0653 - 35305279-35306163                                         29   3.0  
01_06_0959 - 33362810-33363125,33363309-33363475,33363583-333644...    28   6.9  
01_05_0537 - 23019590-23020126,23020841-23021022,23021141-230213...    28   6.9  
02_01_0739 + 5505630-5505654,5505965-5506049,5506444-5506519,550...    28   9.2  

>09_02_0321 - 7223393-7224751,7225971-7226063,7227801-7227947
          Length = 532

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = +1

Query: 58  PTTTKILSAFIHSVCLTEEKQSTSSKTIVNMNKIKVSLKINKCSTIFNFQCNCQNSRH 231
           PT+T++    + ++CL  E  ST S  I N ++   ++  ++CS  F+F C   N RH
Sbjct: 72  PTSTRMADKNLCAICL--EPLSTGSVDIDNGDR--PAIFTSQCSHSFHFLCIASNIRH 125


>03_06_0653 - 35305279-35306163
          Length = 294

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = -1

Query: 475 KRRA*AMNSRRSCRTSVLPTSTRRTSIFWSPYLNSPSENNVTS 347
           K+R  A      CRTS  P +TRRT   W P L S  E   +S
Sbjct: 249 KKRNSAAVPSTGCRTSRAPATTRRT---WEPSLPSVEEERESS 288


>01_06_0959 -
           33362810-33363125,33363309-33363475,33363583-33364410,
           33364483-33364719,33365455-33365871,33365951-33366412,
           33367197-33367382
          Length = 870

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 530 LHTLCHSIHPYIGLFRQCRTHRYIHQQKLQ 619
           LH + H  HP +  F   R H Y+H  K +
Sbjct: 167 LHNIGHENHPTVLRFYSLRVHDYVHTIKFR 196


>01_05_0537 -
           23019590-23020126,23020841-23021022,23021141-23021377,
           23021460-23021567,23022107-23022257
          Length = 404

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 96  GVFNRRKTKYIIEDHCEYEQNKSFT*NQQMQHNFQFSM*LSKFPPFNLHYCWICSNSIFE 275
           GVFN+     I+ DHC  + +  +  +Q ++   Q S  +    P ++ +   CS    E
Sbjct: 277 GVFNKEIRGRILSDHCYLDIHYMYL-SQSIEAVIQVSTEIDSNDPRHVRFTAFCSGFDRE 335

Query: 276 ILI 284
           IL+
Sbjct: 336 ILL 338


>02_01_0739 +
           5505630-5505654,5505965-5506049,5506444-5506519,
           5506694-5506857,5506878-5506935,5507283-5507399,
           5507543-5507638,5507905-5508186
          Length = 300

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 438 VGLQYCLRAHGVHQSSGVHI 379
           +G+  CL+  GVH+S G HI
Sbjct: 41  IGVFICLKCSGVHRSLGTHI 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,141,190
Number of Sequences: 37544
Number of extensions: 376485
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)