Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11i02
(754 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X75913-1|CAA53512.1| 282|Homo sapiens gCIq-R protein. 67 6e-11
M69039-1|AAA73055.1| 278|Homo sapiens protein ( Human pre-mRNA ... 67 6e-11
L04636-1|AAA16315.1| 282|Homo sapiens splicing factor protein. 67 6e-11
DQ372108-1|ABC79624.1| 282|Homo sapiens complement component 1,... 67 6e-11
BT019899-1|AAV38702.1| 282|Homo sapiens complement component 1,... 67 6e-11
BT019898-1|AAV38701.1| 282|Homo sapiens complement component 1,... 67 6e-11
BC013731-1|AAH13731.1| 282|Homo sapiens complement component 1,... 67 6e-11
BC000435-1|AAH00435.1| 282|Homo sapiens complement component 1,... 67 6e-11
AF338439-1|AAK26580.1| 282|Homo sapiens gC1qR/p32 protein. 67 6e-11
AF275902-1|AAF78763.1| 197|Homo sapiens hyaluronan-binding prot... 67 6e-11
AF169240-1|AAD51316.1| 81|Homo sapiens MHC class II antigen pr... 31 3.4
>X75913-1|CAA53512.1| 282|Homo sapiens gCIq-R protein.
Length = 282
Score = 67.3 bits (157), Expect = 6e-11
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Frame = -3
Query: 731 QTEKQEFSEMRSKPQFEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY 561
+ E+QE E+ S P F V++++ D L C Y +D + +D+F I E++
Sbjct: 154 KVEEQE-PELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQ 212
Query: 560 ---KGEWNDKVYAVAXXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLL 390
+ EW D Y + LM+ L ++G+ N FA +L + STA EH YI L
Sbjct: 213 STGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFL 272
Query: 389 ESISKF 372
E + F
Sbjct: 273 EDLKSF 278
>M69039-1|AAA73055.1| 278|Homo sapiens protein ( Human pre-mRNA
splicing factor SF2p32, complete sequence. ).
Length = 278
Score = 67.3 bits (157), Expect = 6e-11
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Frame = -3
Query: 731 QTEKQEFSEMRSKPQFEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY 561
+ E+QE E+ S P F V++++ D L C Y +D + +D+F I E++
Sbjct: 150 KVEEQE-PELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQ 208
Query: 560 ---KGEWNDKVYAVAXXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLL 390
+ EW D Y + LM+ L ++G+ N FA +L + STA EH YI L
Sbjct: 209 STGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFL 268
Query: 389 ESISKF 372
E + F
Sbjct: 269 EDLKSF 274
>L04636-1|AAA16315.1| 282|Homo sapiens splicing factor protein.
Length = 282
Score = 67.3 bits (157), Expect = 6e-11
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Frame = -3
Query: 731 QTEKQEFSEMRSKPQFEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY 561
+ E+QE E+ S P F V++++ D L C Y +D + +D+F I E++
Sbjct: 154 KVEEQE-PELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQ 212
Query: 560 ---KGEWNDKVYAVAXXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLL 390
+ EW D Y + LM+ L ++G+ N FA +L + STA EH YI L
Sbjct: 213 STGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFL 272
Query: 389 ESISKF 372
E + F
Sbjct: 273 EDLKSF 278
>DQ372108-1|ABC79624.1| 282|Homo sapiens complement component 1, q
subcomponent binding protein protein.
Length = 282
Score = 67.3 bits (157), Expect = 6e-11
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Frame = -3
Query: 731 QTEKQEFSEMRSKPQFEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY 561
+ E+QE E+ S P F V++++ D L C Y +D + +D+F I E++
Sbjct: 154 KVEEQE-PELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQ 212
Query: 560 ---KGEWNDKVYAVAXXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLL 390
+ EW D Y + LM+ L ++G+ N FA +L + STA EH YI L
Sbjct: 213 STGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFL 272
Query: 389 ESISKF 372
E + F
Sbjct: 273 EDLKSF 278
>BT019899-1|AAV38702.1| 282|Homo sapiens complement component 1, q
subcomponent binding protein protein.
Length = 282
Score = 67.3 bits (157), Expect = 6e-11
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Frame = -3
Query: 731 QTEKQEFSEMRSKPQFEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY 561
+ E+QE E+ S P F V++++ D L C Y +D + +D+F I E++
Sbjct: 154 KVEEQE-PELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQ 212
Query: 560 ---KGEWNDKVYAVAXXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLL 390
+ EW D Y + LM+ L ++G+ N FA +L + STA EH YI L
Sbjct: 213 STGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFL 272
Query: 389 ESISKF 372
E + F
Sbjct: 273 EDLKSF 278
>BT019898-1|AAV38701.1| 282|Homo sapiens complement component 1, q
subcomponent binding protein protein.
Length = 282
Score = 67.3 bits (157), Expect = 6e-11
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Frame = -3
Query: 731 QTEKQEFSEMRSKPQFEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY 561
+ E+QE E+ S P F V++++ D L C Y +D + +D+F I E++
Sbjct: 154 KVEEQE-PELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQ 212
Query: 560 ---KGEWNDKVYAVAXXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLL 390
+ EW D Y + LM+ L ++G+ N FA +L + STA EH YI L
Sbjct: 213 STGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFL 272
Query: 389 ESISKF 372
E + F
Sbjct: 273 EDLKSF 278
>BC013731-1|AAH13731.1| 282|Homo sapiens complement component 1, q
subcomponent binding protein protein.
Length = 282
Score = 67.3 bits (157), Expect = 6e-11
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Frame = -3
Query: 731 QTEKQEFSEMRSKPQFEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY 561
+ E+QE E+ S P F V++++ D L C Y +D + +D+F I E++
Sbjct: 154 KVEEQE-PELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQ 212
Query: 560 ---KGEWNDKVYAVAXXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLL 390
+ EW D Y + LM+ L ++G+ N FA +L + STA EH YI L
Sbjct: 213 STGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFL 272
Query: 389 ESISKF 372
E + F
Sbjct: 273 EDLKSF 278
>BC000435-1|AAH00435.1| 282|Homo sapiens complement component 1, q
subcomponent binding protein protein.
Length = 282
Score = 67.3 bits (157), Expect = 6e-11
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Frame = -3
Query: 731 QTEKQEFSEMRSKPQFEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY 561
+ E+QE E+ S P F V++++ D L C Y +D + +D+F I E++
Sbjct: 154 KVEEQE-PELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQ 212
Query: 560 ---KGEWNDKVYAVAXXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLL 390
+ EW D Y + LM+ L ++G+ N FA +L + STA EH YI L
Sbjct: 213 STGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFL 272
Query: 389 ESISKF 372
E + F
Sbjct: 273 EDLKSF 278
>AF338439-1|AAK26580.1| 282|Homo sapiens gC1qR/p32 protein.
Length = 282
Score = 67.3 bits (157), Expect = 6e-11
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Frame = -3
Query: 731 QTEKQEFSEMRSKPQFEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY 561
+ E+QE E+ S P F V++++ D L C Y +D + +D+F I E++
Sbjct: 154 KVEEQE-PELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQ 212
Query: 560 ---KGEWNDKVYAVAXXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLL 390
+ EW D Y + LM+ L ++G+ N FA +L + STA EH YI L
Sbjct: 213 STGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFL 272
Query: 389 ESISKF 372
E + F
Sbjct: 273 EDLKSF 278
>AF275902-1|AAF78763.1| 197|Homo sapiens hyaluronan-binding protein
precursor protein.
Length = 197
Score = 67.3 bits (157), Expect = 6e-11
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Frame = -3
Query: 731 QTEKQEFSEMRSKPQFEVDLVRGDT---TLGFTCSYLQDPPAASADEYNDVFGIDEITLY 561
+ E+QE E+ S P F V++++ D L C Y +D + +D+F I E++
Sbjct: 69 KVEEQE-PELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQ 127
Query: 560 ---KGEWNDKVYAVAXXXXXXXXXXXLMNLLEEKGISNEFAQKLSDFSTAYEHTAYINLL 390
+ EW D Y + LM+ L ++G+ N FA +L + STA EH YI L
Sbjct: 128 STGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFL 187
Query: 389 ESISKF 372
E + F
Sbjct: 188 EDLKSF 193
>AF169240-1|AAD51316.1| 81|Homo sapiens MHC class II antigen
protein.
Length = 81
Score = 31.5 bits (68), Expect = 3.4
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +2
Query: 554 HPYIGLFRQCRTHRYIHQQKLQVDLEDRSR*NQGWCLLGLGQPQTEVWNASQRTLASQ 727
H + G R RY H Q+ V + S + W + LG+P E WN SQ+ L Q
Sbjct: 11 HFFNGTERVRYLDRYFHNQEENVRFD--SDVGEFWAVTELGRPDAEYWN-SQKDLLEQ 65
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,786,664
Number of Sequences: 237096
Number of extensions: 2207321
Number of successful extensions: 6220
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6209
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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