Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i02
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical pr...    45   7e-05
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    33   0.16 
AF022978-6|AAG24184.1|  357|Caenorhabditis elegans Seven tm rece...    31   0.88 
U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical
           protein F59A2.3 protein.
          Length = 236

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
 Frame = -3

Query: 692 PQFEVDLVRGDTTLGFTCSYLQDPPAASADEYNDVFGIDEITLYKGEWN------DKVYA 531
           P F V++ +GD  L F    +  P     DEY+  F ++E  +     N       +VYA
Sbjct: 124 PPFTVEITKGDQRLCFHLELV--PVDDQPDEYD--FRVEEFYVAPSAKNGNEDVPSEVYA 179

Query: 530 VAXXXXXXXXXXXL-MNLLEEKGISNEFAQKLSDFSTAYEHTAYINLLESISKF 372
            +           L +  LEE+G+   F + L  ++T YEH+ Y+ LL+ I KF
Sbjct: 180 SSGKYIDPDLHDLLFVRYLEERGLDARFCKTLVAYATHYEHSQYVGLLDKIKKF 233


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +1

Query: 100 CLTEEKQSTSSKTIVNMNKIKVSLKINKCSTIFNFQCNCQNSRHLICTIVGSVA 261
           C T E+  T+S T  N   IK++L IN      N    C  S H  C   G+ A
Sbjct: 177 CATNEQLPTTSSTSTNAPTIKITLNINDAYFDSNCAPKCTQSCHSQCISQGNPA 230


>AF022978-6|AAG24184.1|  357|Caenorhabditis elegans Seven tm
           receptor protein 196 protein.
          Length = 357

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 26/91 (28%), Positives = 44/91 (48%)
 Frame = +1

Query: 121 STSSKTIVNMNKIKVSLKINKCSTIFNFQCNCQNSRHLICTIVGSVAIRFSKF*LFTELA 300
           S S   +VNM+ I +      C   F   C    S+ L  T   S A +  +  LF  L 
Sbjct: 202 SLSFNGVVNMDLI-LGTSFG-CVAYFGINCYRLISQKLSTTESLSQATKNLQLQLFYALI 259

Query: 301 NKNKI*CLYVI*NFSLKLHYFPMVNLDMDSR 393
            ++ I C+++    ++ +  FPM+N+D+DS+
Sbjct: 260 VQSAIPCMFMYIPAAI-IFTFPMINIDLDSK 289


>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical protein
            B0412.3 protein.
          Length = 1107

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +1

Query: 28   LKAVLAQKLPPTTTKILSAFIHSVCLTEEKQSTSSKTIVNMNKIKVSLKINKCSTIFN 201
            L+  L+ K+      +  + +  V +T ++  T + T++NMN I ++  +N C  I N
Sbjct: 836  LQLELSYKISEDGILVTKSTMLEVGVTAKEPFTVTSTVMNMNGIPMTSILNNCDHILN 893


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,161,138
Number of Sequences: 27780
Number of extensions: 363563
Number of successful extensions: 980
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)