Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i02
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.1  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   5.4  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   5.4  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   5.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   7.1  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 208 CNCQNSRHLICTIVGSVAIRF 270
           CN   + HL+C I+GS+ + F
Sbjct: 362 CNIV-ATHLVCGILGSILVPF 381


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/49 (22%), Positives = 21/49 (42%)
 Frame = +2

Query: 605 QQKLQVDLEDRSR*NQGWCLLGLGQPQTEVWNASQRTLASQSEHHPQSH 751
           QQ++Q   + + +  Q   ++   QPQ +     Q+    Q +   Q H
Sbjct: 415 QQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQH 463


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 440 ASARIHCLCPSLLVGS*VGRTNTHRAHHQRLHTLC 544
           A  R H +CP ++         T+ A H RL   C
Sbjct: 57  ACCRTHDMCPDVMSAGESKHGLTNTASHTRLSCDC 91


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 440 ASARIHCLCPSLLVGS*VGRTNTHRAHHQRLHTLC 544
           A  R H +CP ++         T+ A H RL   C
Sbjct: 62  ACCRTHDMCPDVMSAGESKHGLTNTASHTRLSCDC 96


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 440 ASARIHCLCPSLLVGS*VGRTNTHRAHHQRLHTLC 544
           A  R H +CP ++         T+ A H RL   C
Sbjct: 62  ACCRTHDMCPDVMSAGESKHGLTNTASHTRLSCDC 96


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 637 PIFKIHLQLLLMNITMCSALTK*PYIRVNGMTKCMQ 530
           P   +H QLL      C+A     + R+ G   C+Q
Sbjct: 299 PPLSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQ 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,980
Number of Sequences: 438
Number of extensions: 4375
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)