Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11h19
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe...    29   0.76 
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    27   1.8  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    27   1.8  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    27   3.1  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   7.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.4  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   9.4  

>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 471 ILSTPQSEPTKNMSPYDLTVTISRSGPSGNLKHRANI 581
           + S P  + +K  S   +  TI   GP GN KHR  +
Sbjct: 129 VKSYPNGKVSKKFSELKIGDTIGVRGPKGNWKHRTGL 165


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 586 QWMFALCFKLPE-GPLRDIVTVRS 518
           QW+F  C+KLPE     DI T+RS
Sbjct: 174 QWIFCFCYKLPELLNGEDISTLRS 197


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 586 QWMFALCFKLPE-GPLRDIVTVRS 518
           QW+F  C+KLPE     DI T+RS
Sbjct: 174 QWIFCFCYKLPELLNGEDISTLRS 197


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -1

Query: 361 IIEIEVMEIVDGHIIMVAMPKKVAVLTFSHCFKRAASIAMFSNSNLQRVKFL 206
           I E    ++ D  I +  + K +  ++  HC     +IA  ++SN+QRV +L
Sbjct: 134 IYETNTKDVKDRLIGITGLRKILEHVSKMHCQLGTVAIAGLNSSNIQRVIYL 185


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 579 IH*MYTLQSKWSNRLYLLNSCNK 647
           IH ++ L  +W+ ++Y L +C K
Sbjct: 64  IHALFWLAGEWNTKVYCLMTCRK 86


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 439  DFMNHMPLKQYNFMERSDCPV 377
            D+ NHM LK   FM+  + PV
Sbjct: 2210 DYFNHMDLKASRFMDIYEYPV 2230


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 334 VDGHIIMVAMPKKVAVLTFSHCFKRAASIAMFSNS 230
           VDGHI+      K+   TFS C+  ++ +  F+ +
Sbjct: 59  VDGHILAAYALSKLGPDTFSICYPFSSKLDAFAQT 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,745
Number of Sequences: 5004
Number of extensions: 58279
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)