Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11h19
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.5  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    23   3.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.4  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   5.9  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   5.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.8  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 489 SEPTKNMSPYDLTVTISRSGPS 554
           SEPT+ +SPY   +    S PS
Sbjct: 373 SEPTERISPYGYPIGSGGSFPS 394


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 417 NGMWFMKSNSPFVNGE 464
           NG++ +K+ SPF N E
Sbjct: 47  NGLYTLKTTSPFKNTE 62


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 472 IYHSPFTNGELDFMNHMPLKQYNFMERS 389
           +Y+SP T+  L ++N  P  +  + E +
Sbjct: 266 LYYSPLTSHSLYYVNMEPFMKSQYEENN 293


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = +1

Query: 148 FQTKKLVLKIIWLQLLPQSSKT*LSEDWNWKTLLSR 255
           +   K+ L+++   L P +     +ED NW+ + ++
Sbjct: 80  YDRTKMSLQLVLAALYPPNKLQQWNEDLNWQPIATK 115


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = +1

Query: 148 FQTKKLVLKIIWLQLLPQSSKT*LSEDWNWKTLLSR 255
           +   K+ L+++   L P +     +ED NW+ + ++
Sbjct: 95  YDRTKMSLQLVLAALYPPNKLQQWNEDLNWQPIATK 130


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 464 FAVHKWRVRLHEPHA 420
           F+ H+W + ++EP A
Sbjct: 507 FSFHQWGILVYEPSA 521


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,522
Number of Sequences: 438
Number of extensions: 3739
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)