Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11h17
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 32 0.068
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 2.6
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 27 3.4
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 26 4.5
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 5.9
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p... 26 5.9
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 5.9
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 5.9
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 25 7.8
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 32.3 bits (70), Expect = 0.068
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = -2
Query: 550 LGMMKQFVKALDKNNASFEYLCKKIPRLSDAKINGVFDGPQIRSLMA 410
L + +VKAL++ +A++E L K L D+ ++ +FDG S+ A
Sbjct: 211 LSLDSSYVKALNRRSAAYEQLGKLDEALMDSTVSCIFDGFANESMTA 257
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 301 NKVANLLDKYQKLGCNMSIKLHFLDSHVDFF 209
N+V N L Q + + ++HFL++H+ F
Sbjct: 80 NRVCNALALLQCIASHPETRIHFLNAHITLF 110
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 370 DAWLAFRDVVNNFLGNNKHPDYKNK 296
D+W F D NN HPDY+NK
Sbjct: 524 DSW--FNDTENNGHAQWVHPDYRNK 546
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 337 NFLGNNKHPDYKNKVANLLDKYQKLGCNMSIKLHFLDSHVDFFPDNL 197
+++ + KHP+YKN ++KY K G K+ D F +N+
Sbjct: 78 HYVSSPKHPNYKN-----IEKYLKPGWLFGQKVDSADFQYSAFRENM 119
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -3
Query: 306 IKIRLQTYWISI---KNWGVI*A*NSTF*IHMWTFFLIILVITV 184
I + LQ YW+S ++W + + ++ +H W FL++++ V
Sbjct: 2190 ISVFLQNYWMSSVYGRSWAFMWSAHN---VHKWAMFLLVILFYV 2230
>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = -2
Query: 325 NNKHPDYKNKVANLLDKYQKLGCNMSIKLHFLDSHVDFFPDNLGDYSKEQEERFYQDIKT 146
N+K P KN+ A ++D L S L+ S + ++ Y E +E + T
Sbjct: 48 NSKSPSLKNETAFVVDSVSTLSAESSALLYNTQSSL-LTGLSMNGYLGEYQEDIIHHLIT 106
Query: 145 METRYQCRWNV-NMMADYCWSL 83
E + ++ N + WS+
Sbjct: 107 REKNFLLNVHLSNQQPELRWSM 128
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 385 NNTESDAWLAFRDVVNNFLGNN-KHPDYKNKVANLLDKYQKLGC 257
+N+ + L + VN LG+ H D+KN++ ++ +++L C
Sbjct: 662 SNSVTHRALLLKLCVNKLLGSLLDHNDFKNRLETAIETFRELPC 705
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 5.9
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 2/148 (1%)
Frame = -2
Query: 553 KLGMMKQFVKALDKNNASFEYLCKKIPRLSDAKINGVFDGPQIRSLMADENFDATMNNTE 374
KLG +++ K ++K NAS L +I L A+I G + SL + +++
Sbjct: 1286 KLGKIQELEKEVEKLNASLNPLQTEINELK-AEI-----GAKTASLNLMKEYNSRWK--- 1336
Query: 373 SDAWLAFRDVVNNFLGNNKHPDYKNKVANLLDKYQKLGCNMSIKLHFLDSHVDFFPDNLG 194
L F+ V+N + P ++ + +K + KL D F +
Sbjct: 1337 ----LRFQSVLNKY--ERVDPTQLEELKKNCEALEKEKQELETKLQETAKETDTFKQQVN 1390
Query: 193 DYSKEQE--ERFYQDIKTMETRYQCRWN 116
++E E ++ + T TR WN
Sbjct: 1391 SLNEEVENLKKEVEQANTKNTRLAAAWN 1418
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 25.4 bits (53), Expect = 7.8
Identities = 21/107 (19%), Positives = 42/107 (39%)
Frame = -2
Query: 520 LDKNNASFEYLCKKIPRLSDAKINGVFDGPQIRSLMADENFDATMNNTESDAWLAFRDVV 341
+ N +F LC+ + + NG++ + +SL + + + + N F
Sbjct: 162 ISPNERNFTRLCRSASSVHISYQNGLYCIDKDKSLTKEPSVNIILMNVGKSLETFFTVDK 221
Query: 340 NNFLGNNKHPDYKNKVANLLDKYQKLGCNMSIKLHFLDSHVDFFPDN 200
+ FL K P + L D +Q C+ + LD + P++
Sbjct: 222 DQFLLYKKPPSSNGVLKPLKDVFQYGRCSSLLVRSQLDCYDKKIPES 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,394
Number of Sequences: 5004
Number of extensions: 58699
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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