Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11h17
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.5  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.5  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   8.5  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 340 NNFLGNNKHPDYKNKVANLLDKYQKLGCNM 251
           NN+  NN + +Y N   N  + Y+KL  N+
Sbjct: 327 NNYNNNNYNNNYNNYNNNNYNNYKKLYYNI 356


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 169 RFYQDIKTMETRYQCRWNVNMMADYCWSLT 80
           RFY  I+ M   Y C W        CW++T
Sbjct: 474 RFYDGIRDMIGYYPCCW-----WKICWTIT 498


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 169 RFYQDIKTMETRYQCRWNVNMMADYCWSLT 80
           RFY  I+ M   Y C W        CW++T
Sbjct: 527 RFYDGIRDMIGYYPCCW-----WKICWTIT 551


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 413 HQRSDLRSIEHSVN 454
           HQR   +++EHS+N
Sbjct: 23  HQRKSSKNLEHSMN 36


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 86  TDK*YY*RYSQKNSQKNY 33
           TD  +Y RY ++ S +NY
Sbjct: 171 TDSRHYDRYKEEESNENY 188


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 340 NNFLGNNKHPDYKNKVANLLDKYQKLGCNMS 248
           NN+  NN + +Y N   N  + Y+KL  N++
Sbjct: 328 NNY--NNNYNNYNNYNNNYNNNYKKLYYNIN 356


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 217 DFFPDNLGDYSKEQEERFY 161
           D  P  L D+S++QE+  Y
Sbjct: 122 DNSPSFLSDHSRDQEQNLY 140


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 280 DKYQKLGCNMSIKLHFLDSHVDFFP 206
           + Y+KL CN   KL++  ++++  P
Sbjct: 94  NNYKKLYCNNYKKLYYNINYIEQIP 118


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 280 DKYQKLGCNMSIKLHFLDSHVDFFP 206
           + Y+KL CN   KL++  ++++  P
Sbjct: 94  NNYKKLYCNNYKKLYYNINYIEQIP 118


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 280 DKYQKLGCNMSIKLHFLDSHVDFFP 206
           + Y+KL CN   KL++  ++++  P
Sbjct: 94  NNYKKLYCNNYRKLYYNINYIEQIP 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,110
Number of Sequences: 438
Number of extensions: 3911
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)