Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11h14
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    27   3.0  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   4.0  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.3  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   7.0  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   9.3  

>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 263 YNKVNYYKHSSCLHNQYKYINISKIDLSIFYPYELNQLDRLAPF 394
           Y+K+ +YK+ S + +    +N   + + +FY     QLD    F
Sbjct: 368 YSKLRFYKNGSWIKSTVSVVNDVPLWVVLFYLMRSGQLDAALQF 411


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 230 RGKRHLE*SNDYNKVNYYKHSSCLHNQYKYINISKIDLSIFYPY 361
           RG ++L+ +   NK   Y+   C       +N+  +  +IFYPY
Sbjct: 678 RGNQYLQDNRIDNKCYLYERQKCADAIGYALNLIYLLAAIFYPY 721


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +2

Query: 134 IKNRDINIFHLEAWLNRQVFTSSSVSLKATFIRGKRHLE*SNDYNKVNYYKHSSCLHNQY 313
           +KN + N+ H +   N   F+ ++VSL       K +   S D+ K+     SS L N+ 
Sbjct: 237 LKNSERNLLHRQLLSNHPFFSQNNVSLST---NSKNY---STDFTKIQ--SDSSLLQNRQ 288

Query: 314 KYINISKIDLSIF 352
           +   I    LS F
Sbjct: 289 QNHRIETDQLSHF 301


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +2

Query: 206 VSLKATFIRGKRHLE*SNDYNKVNYYKHSSCLHNQYKYINISKIDLSIF--YPYELNQLD 379
           V  + TF+R K  +E   ++ +  + K    +  + KY+   K+ +     Y Y    L+
Sbjct: 241 VEPQLTFLRSKNSIEKPRNFRREKFLKKFLAMQKEIKYLRKRKLQIRKIPNYKYSDRSLN 300

Query: 380 RLAP 391
              P
Sbjct: 301 SKTP 304


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 382 ISTLLWQTRFITFKLIMNKNIIF 450
           I+ L+W  R I F++ MN+N ++
Sbjct: 700 ITHLVWDDRVICFRVTMNENSVW 722


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,913
Number of Sequences: 5004
Number of extensions: 51504
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)