Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11h07
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 31 0.13
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.53
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi... 29 0.70
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 28 1.2
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 27 2.8
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo... 26 6.5
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 8.6
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 25 8.6
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 25 8.6
>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 149
Score = 31.5 bits (68), Expect = 0.13
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -1
Query: 420 FQVANSTQPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEM 256
FQ+ + Q + +E LN+ Y Y E+ P P S ++ E + E E EM
Sbjct: 89 FQLVDERQIEEPGEDEMALNAGGYYPYAEEVPPPSYPSLEEENEGNEEIEESEEM 143
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.5 bits (63), Expect = 0.53
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 483 NGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYK 367
NG+ V+N W+L NG I + +A++ +K+ T K
Sbjct: 653 NGIQRVVNYWLLHNGFSIGIGDTIADA-DTMKEVTRTVK 690
>SPBC21H7.07c |his5||imidazoleglycerol phosphate
dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 29.1 bits (62), Expect = 0.70
Identities = 13/45 (28%), Positives = 29/45 (64%)
Frame = -1
Query: 393 LKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGE 259
+++ TNE K++ L ++AP+P+ +++I ++ + A +KGE
Sbjct: 6 VERNTNETKISVAIAL---DKAPLPEESNFIDELITSKHANQKGE 47
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 28.3 bits (60), Expect = 1.2
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +2
Query: 176 VAPDIITNIATGTIYIQYLAKNDLLSFISPFSRA--SLSRSIFCIYDAVSG--TGACSIY 343
V+PDI T++ Y YL +N + SFI FSRA L S + + +SG G C +
Sbjct: 1476 VSPDISTHL-----YKYYLRRNFVSSFIDAFSRAFSELLSSNKDVLEVLSGLEAGQCLLI 1530
Query: 344 LK*NLELSLYSLV 382
+L+++S++
Sbjct: 1531 TFAQNKLTVHSVL 1543
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 239 NDLLSFISPFSRASLSRSIFCIYDAVSGTGACSIYL 346
N L+SF +PF +AS+ ++ + + TGA I+L
Sbjct: 419 NFLISFFTPFIQASIGFKYGYVFASCNLTGAIVIFL 454
>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
VI|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -1
Query: 552 STEGENSKGTEYLSSVKAQAFLENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNE 373
S E N+K ++ S+V+ Q L+ GL++ I+P+ VI + A A
Sbjct: 43 SLEEINTKYNDFFSNVQDQFELQRGLNNCFAYDIVPSSDVIEQALRAARRVNDFPTAVRI 102
Query: 372 YK 367
++
Sbjct: 103 FE 104
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 617 LKSIRTGVPIIDQILFNEKHL 555
L +R +PI+D+ F EKHL
Sbjct: 1380 LNFLRNFIPILDEQKFREKHL 1400
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 486 ENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYKL 364
EN + + ++PNG IAVN Q N LK A E+KL
Sbjct: 477 ENRFGESVTVDLIPNGRNIAVNNQ--NKMNYLK-ALTEHKL 514
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -1
Query: 570 QRKAS*STEGENSKGTEYLSSVKAQAFLENGLSDVINAWILPN 442
+R A+ EN+KG+E S K +++ S ++N ++ P+
Sbjct: 240 KRGAAALANSENNKGSEAGVSAKTNPDMDSDSSAIVNEFLKPD 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,147
Number of Sequences: 5004
Number of extensions: 56926
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -