Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11h07
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0008 + 8901817-8902146,8903058-8903120,8903226-8903321,890...    49   3e-06
07_03_0960 - 22902279-22902530,22902604-22902726,22902855-229029...    30   2.2  
11_01_0649 - 5259038-5259195,5259824-5259887,5260446-5260512,526...    29   2.9  
06_03_0123 - 16924074-16926089                                         28   9.0  

>11_03_0008 +
           8901817-8902146,8903058-8903120,8903226-8903321,
           8903924-8903971,8904558-8904629,8905373-8905431,
           8905582-8905672,8905749-8905886
          Length = 298

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
 Frame = -1

Query: 516 LSSVKAQAFLENGLSDVINAWILPNGAVIAVNF-QVANSTQPLK-QATNEYKLNSKFYLR 343
           +SS+KA+      L + I    +    ++AVN+  V   T P   +  +++  NS   L+
Sbjct: 158 VSSIKARCIPRESLDEHIVIH-MDGVNILAVNYGSVGGCTYPRPVKMPSKWVFNSYTVLK 216

Query: 342 YIEQAPVPDTASYIQKMERDREAREKGEMKDNRSFLAKYWMYIVPVAIFVM--ISGATN- 172
             EQAP   T S++ ++        +      +SF AKYWMYI+P+ + VM  ++ A N 
Sbjct: 217 TSEQAP--RTPSFVDQLIEAENGLGEVVKSPEKSFWAKYWMYIIPLGLIVMNAVTAAANM 274

Query: 171 PEASA 157
           PE  A
Sbjct: 275 PEEQA 279


>07_03_0960 -
           22902279-22902530,22902604-22902726,22902855-22902941,
           22903017-22903068,22903197-22903321,22903476-22903684,
           22903990-22904191,22906205-22906309,22907264-22907325,
           22907625-22907814,22907887-22907982,22908069-22908171,
           22909117-22909220,22910239-22910325,22911238-22911323,
           22911410-22911502,22912586-22912673,22912786-22912898,
           22912989-22913111,22914473-22914524,22915185-22915286,
           22915539-22915582,22915667-22915740,22915825-22915916,
           22916566-22916633,22918572-22918647,22918767-22918952
          Length = 997

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -3

Query: 175 KSRGLSTSWTLILFYNSIMFLSNLLKFIVYYKHANRKLANVLLKPKRC 32
           K +GL T   LI FY+S  + +NL++ +VY K +   L   L++ K C
Sbjct: 242 KEKGLDTRLELIKFYDS-HYSANLMQLVVYGKESLDNL-QTLVENKFC 287


>11_01_0649 -
           5259038-5259195,5259824-5259887,5260446-5260512,
           5260534-5260607,5260725-5261510,5262623-5262685
          Length = 403

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -3

Query: 223 DVYCSSSNICYDIRSHKS---RGLSTSWTLILFYNSIMFL 113
           D  C     CYDI+ HK     GLS + TL+L     +F+
Sbjct: 246 DCCCEGFEPCYDIKDHKCMRLEGLSEAKTLVLINERRLFI 285


>06_03_0123 - 16924074-16926089
          Length = 671

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +2

Query: 185 DIITNIATGTIYIQYLAKNDLLSFISPFSRASLSRSIFCIYDAVSGTGACS 337
           D I+  A  T Y+Q     + L F     R  L  SIFCI   +    A S
Sbjct: 374 DTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATS 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,818,728
Number of Sequences: 37544
Number of extensions: 303086
Number of successful extensions: 770
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)