Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11h07
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-7|CAA21610.1|  236|Caenorhabditis elegans Hypothetical ...    88   5e-18
Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical pr...    31   0.86 
U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr...    30   2.0  

>AL032637-7|CAA21610.1|  236|Caenorhabditis elegans Hypothetical
           protein Y43F8C.7 protein.
          Length = 236

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 37/57 (64%), Positives = 46/57 (80%)
 Frame = -1

Query: 327 PVPDTASYIQKMERDREAREKGEMKDNRSFLAKYWMYIVPVAIFVMISGATNPEASA 157
           P PDTA+++QKMER++ A++ G   DNRSFLAKYWMYIVPV +F +IS A NPEA A
Sbjct: 175 PTPDTAAFVQKMEREKRAKQHGADADNRSFLAKYWMYIVPVVLFAVISSAVNPEAGA 231


>Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.10 protein.
          Length = 679

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 237 RMTCYPSFLPFHVPLCHVPFFVYMTQYRELELAQYILS 350
           R+  Y   + + + L H P +VY+  Y E +LA Y+L+
Sbjct: 310 RVLVYTGDISYSLYLVHWPIYVYVKHYYENQLAAYLLA 347


>U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical protein
            ZK430.5 protein.
          Length = 1276

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
 Frame = -1

Query: 414  VANSTQPLKQATNEY-KLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEMKDNRSF 238
            V+ + +    A+N+   L S+   + + +  + +T S +QK      A +  E KDN   
Sbjct: 1175 VSKTPKQKSLASNQILTLRSETMNQEVPRKAITETRSKVQKAPPHPTASQNEEEKDNLKR 1234

Query: 237  LAKYWMYIVPVAIFVMISGATNPEASAPAGR 145
              K  + +  +  F    GA  P  + P+ R
Sbjct: 1235 TRKRKLLVSTIPNFCKEHGAKKPRTTRPSSR 1265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,620,510
Number of Sequences: 27780
Number of extensions: 304434
Number of successful extensions: 818
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)