Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11h06
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0456 - 18072618-18072718,18072837-18073016,18073425-180735...    49   4e-06
01_01_0640 - 4836004-4836210,4837132-4837215                           31   1.2  
06_03_0714 - 23814826-23814997,23815080-23815164,23815680-238157...    30   2.1  
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72...    29   3.6  

>10_08_0456 -
           18072618-18072718,18072837-18073016,18073425-18073513,
           18074381-18074547,18074880-18075800
          Length = 485

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
 Frame = -3

Query: 606 LNLDVTTMMAYVSNMTNG-------------HHNFIFKQEVLTQQCSWEAERPVKPILRK 466
           +NLD T ++A VS ++NG                F    + +  Q   E + P+   L  
Sbjct: 263 VNLDTTALVAIVSGISNGGVGKLMSIPEAETRARFKCNYKFVMDQAHSELQSPILVELGN 322

Query: 465 LFEGKKLVCCETAWNDFEKILETLGGPMEKKRTVLLKEMITVYPD 331
             +GKK + CET  ++F++I+   GGP E+ R+  L + + V PD
Sbjct: 323 AVDGKKCIICETVNSEFKEIVTMCGGPEEQTRSSQLLKRLIVVPD 367


>01_01_0640 - 4836004-4836210,4837132-4837215
          Length = 96

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -2

Query: 610 NSKLGCNNHDGICEQHDKWPSQFYL 536
           N   G    DGIC  HDKW  QF L
Sbjct: 59  NDTDGNRGRDGICPSHDKWYLQFIL 83


>06_03_0714 -
           23814826-23814997,23815080-23815164,23815680-23815791,
           23817203-23817304,23817375-23817447,23817918-23817997,
           23818076-23818267,23818945-23819064,23819157-23819244,
           23819319-23819353,23819447-23819518,23819860-23819931,
           23820054-23821189,23822011-23822362
          Length = 896

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 672 CINMQSKIPELNHGIDHSEIKTLNLDVTTMMAYVSNMTN 556
           C+++ S + E N  + H   +++N+D   + + VSN T+
Sbjct: 468 CVSLSSSMMEENQSVTHGNQQSINVDWNKVASMVSNATS 506


>02_01_0099 +
           726576-727105,727899-728048,728510-728635,728726-729714,
           729776-729818,730101-730218,730743-730853
          Length = 688

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 636 HGIDHSEIKTLNLDVTTMMAYVS--NMTNGHHNFIFKQEVLTQQ 511
           HG DH++++   + + + ++Y+   N      NF+FK + + Q+
Sbjct: 515 HGADHTKVRAYEILIFSFISYMCKFNFLTSVQNFVFKDDNMEQK 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,602,086
Number of Sequences: 37544
Number of extensions: 388109
Number of successful extensions: 938
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)