Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11h06
(857 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001845-1|AAH01845.1| 421|Homo sapiens chromosome 7 open readi... 145 2e-34
BC000769-1|AAH00769.1| 421|Homo sapiens chromosome 7 open readi... 145 2e-34
AK024820-1|BAB15019.1| 421|Homo sapiens protein ( Homo sapiens ... 145 2e-34
BC111054-1|AAI11055.1| 725|Homo sapiens FGD3 protein protein. 32 3.1
BC032429-1|AAH32429.1| 725|Homo sapiens FGD3 protein protein. 32 3.1
AY211386-1|AAP20645.1| 634|Homo sapiens FGD3 protein. 32 3.1
AL451065-1|CAI95107.1| 725|Homo sapiens FYVE, RhoGEF and PH dom... 32 3.1
AL389924-2|CAI41118.1| 725|Homo sapiens FYVE, RhoGEF and PH dom... 32 3.1
AK000004-1|BAA92229.1| 698|Homo sapiens FLJ00004 protein protein. 32 3.1
AK074102-1|BAB84928.1| 1269|Homo sapiens FLJ00173 protein protein. 31 7.1
AC005390-2|AAC28919.1| 1384|Homo sapiens R31180_1 protein. 31 7.1
AB023180-1|BAA76807.2| 1391|Homo sapiens KIAA0963 protein protein. 31 7.1
>BC001845-1|AAH01845.1| 421|Homo sapiens chromosome 7 open reading
frame 25 protein.
Length = 421
Score = 145 bits (352), Expect = 2e-34
Identities = 86/249 (34%), Positives = 134/249 (53%), Gaps = 9/249 (3%)
Frame = -3
Query: 840 SHQRVVFEFMSGIEENLANKLRAVGIFVKGEILP-NSIVXXXXXXXXXXXXXXXXSNCIN 664
S+ ++F F + + +A KL+ +GI V+G+I+ N+++ +
Sbjct: 161 SNPHIIFAFYNSVSSPMAEKLKEMGISVRGDIVAVNALLDHPEELQPSESESDDEGPELL 220
Query: 663 MQSKIPELN--------HGIDHSEIKTLNLDVTTMMAYVSNMTNGHHNFIFKQEVLTQQC 508
+++ N I K +NLD+TT++ YVS ++ G +FIFK++VLT+Q
Sbjct: 221 QVTRVDRENILASVAFPTEIKVDVCKRVNLDITTLITYVSALSYGGCHFIFKEKVLTEQA 280
Query: 507 SWEAERPVKPILRKLFEGKKLVCCETAWNDFEKILETLGGPMEKKRTVLLKEMITVYPDD 328
E + V P L + K+L CE+A DF+ IL+TLGGP E++R +L + I V PD
Sbjct: 281 EQERKEQVLPQLEAFMKDKELFACESAVKDFQSILDTLGGPGERERATVLIKRINVVPD- 339
Query: 327 FGGEDDYPRQNLKVRGHVRVRSKIIFNFGHRIKALTVSANEGFVRAALQQGVTYAAFVHE 148
+ L + RS IF G +KA+T++AN GFVRAA QGV ++ F+H+
Sbjct: 340 ---QPSERALRLVASSKINSRSLTIFGTGDTLKAITMTANSGFVRAANNQGVKFSVFIHQ 396
Query: 147 SRALTEGKE 121
RALTE KE
Sbjct: 397 PRALTESKE 405
>BC000769-1|AAH00769.1| 421|Homo sapiens chromosome 7 open reading
frame 25 protein.
Length = 421
Score = 145 bits (352), Expect = 2e-34
Identities = 86/249 (34%), Positives = 134/249 (53%), Gaps = 9/249 (3%)
Frame = -3
Query: 840 SHQRVVFEFMSGIEENLANKLRAVGIFVKGEILP-NSIVXXXXXXXXXXXXXXXXSNCIN 664
S+ ++F F + + +A KL+ +GI V+G+I+ N+++ +
Sbjct: 161 SNPHIIFAFYNSVSSPMAEKLKEMGISVRGDIVAVNALLDHPEELQPSESESDDEGPELL 220
Query: 663 MQSKIPELN--------HGIDHSEIKTLNLDVTTMMAYVSNMTNGHHNFIFKQEVLTQQC 508
+++ N I K +NLD+TT++ YVS ++ G +FIFK++VLT+Q
Sbjct: 221 QVTRVDRENILASVAFPTEIKVDVCKRVNLDITTLITYVSALSYGGCHFIFKEKVLTEQA 280
Query: 507 SWEAERPVKPILRKLFEGKKLVCCETAWNDFEKILETLGGPMEKKRTVLLKEMITVYPDD 328
E + V P L + K+L CE+A DF+ IL+TLGGP E++R +L + I V PD
Sbjct: 281 EQERKEQVLPQLEAFMKDKELFACESAVKDFQSILDTLGGPGERERATVLIKRINVVPD- 339
Query: 327 FGGEDDYPRQNLKVRGHVRVRSKIIFNFGHRIKALTVSANEGFVRAALQQGVTYAAFVHE 148
+ L + RS IF G +KA+T++AN GFVRAA QGV ++ F+H+
Sbjct: 340 ---QPSERALRLVASSKINSRSLTIFGTGDTLKAITMTANSGFVRAANNQGVKFSVFIHQ 396
Query: 147 SRALTEGKE 121
RALTE KE
Sbjct: 397 PRALTESKE 405
>AK024820-1|BAB15019.1| 421|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21167 fis, clone CAS10861. ).
Length = 421
Score = 145 bits (352), Expect = 2e-34
Identities = 86/249 (34%), Positives = 134/249 (53%), Gaps = 9/249 (3%)
Frame = -3
Query: 840 SHQRVVFEFMSGIEENLANKLRAVGIFVKGEILP-NSIVXXXXXXXXXXXXXXXXSNCIN 664
S+ ++F F + + +A KL+ +GI V+G+I+ N+++ +
Sbjct: 161 SNPHIIFAFYNSVSSPMAEKLKEMGISVRGDIVAVNALLDHPEELQPSESESDDEGPELL 220
Query: 663 MQSKIPELN--------HGIDHSEIKTLNLDVTTMMAYVSNMTNGHHNFIFKQEVLTQQC 508
+++ N I K +NLD+TT++ YVS ++ G +FIFK++VLT+Q
Sbjct: 221 QVTRVDRENILASVAFPTEIKVDVCKRVNLDITTLITYVSALSYGGCHFIFKEKVLTEQA 280
Query: 507 SWEAERPVKPILRKLFEGKKLVCCETAWNDFEKILETLGGPMEKKRTVLLKEMITVYPDD 328
E + V P L + K+L CE+A DF+ IL+TLGGP E++R +L + I V PD
Sbjct: 281 EQERKEQVLPQLEAFMKDKELFACESAVKDFQSILDTLGGPGERERATVLIKRINVVPD- 339
Query: 327 FGGEDDYPRQNLKVRGHVRVRSKIIFNFGHRIKALTVSANEGFVRAALQQGVTYAAFVHE 148
+ L + RS IF G +KA+T++AN GFVRAA QGV ++ F+H+
Sbjct: 340 ---QPSERALRLVASSKINSRSLTIFGTGDTLKAITMTANSGFVRAANNQGVKFSVFIHQ 396
Query: 147 SRALTEGKE 121
RALTE KE
Sbjct: 397 PRALTESKE 405
>BC111054-1|AAI11055.1| 725|Homo sapiens FGD3 protein protein.
Length = 725
Score = 31.9 bits (69), Expect = 3.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 241 SSNQSAYSLGKRRLRQGCSSTGRNICGFCSRVKSSH*REGRLCK 110
S ++ S+ KRR C G ICG CS K+ + R+ R+C+
Sbjct: 540 SCGETFNSITKRR--HHCKLCGAVICGKCSEFKAENSRQSRVCR 581
>BC032429-1|AAH32429.1| 725|Homo sapiens FGD3 protein protein.
Length = 725
Score = 31.9 bits (69), Expect = 3.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 241 SSNQSAYSLGKRRLRQGCSSTGRNICGFCSRVKSSH*REGRLCK 110
S ++ S+ KRR C G ICG CS K+ + R+ R+C+
Sbjct: 540 SCGETFNSITKRR--HHCKLCGAVICGKCSEFKAENSRQSRVCR 581
>AY211386-1|AAP20645.1| 634|Homo sapiens FGD3 protein.
Length = 634
Score = 31.9 bits (69), Expect = 3.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 241 SSNQSAYSLGKRRLRQGCSSTGRNICGFCSRVKSSH*REGRLCK 110
S ++ S+ KRR C G ICG CS K+ + R+ R+C+
Sbjct: 540 SCGETFNSITKRR--HHCKLCGAVICGKCSEFKAENSRQSRVCR 581
>AL451065-1|CAI95107.1| 725|Homo sapiens FYVE, RhoGEF and PH domain
containing 3 protein.
Length = 725
Score = 31.9 bits (69), Expect = 3.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 241 SSNQSAYSLGKRRLRQGCSSTGRNICGFCSRVKSSH*REGRLCK 110
S ++ S+ KRR C G ICG CS K+ + R+ R+C+
Sbjct: 540 SCGETFNSITKRR--HHCKLCGAVICGKCSEFKAENSRQSRVCR 581
>AL389924-2|CAI41118.1| 725|Homo sapiens FYVE, RhoGEF and PH domain
containing 3 protein.
Length = 725
Score = 31.9 bits (69), Expect = 3.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 241 SSNQSAYSLGKRRLRQGCSSTGRNICGFCSRVKSSH*REGRLCK 110
S ++ S+ KRR C G ICG CS K+ + R+ R+C+
Sbjct: 540 SCGETFNSITKRR--HHCKLCGAVICGKCSEFKAENSRQSRVCR 581
>AK000004-1|BAA92229.1| 698|Homo sapiens FLJ00004 protein protein.
Length = 698
Score = 31.9 bits (69), Expect = 3.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 241 SSNQSAYSLGKRRLRQGCSSTGRNICGFCSRVKSSH*REGRLCK 110
S ++ S+ KRR C G ICG CS K+ + R+ R+C+
Sbjct: 604 SCGETFNSITKRR--HHCKLCGAVICGKCSEFKAENSRQSRVCR 645
>AK074102-1|BAB84928.1| 1269|Homo sapiens FLJ00173 protein protein.
Length = 1269
Score = 30.7 bits (66), Expect = 7.1
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -3
Query: 423 NDFEKILETLGGPMEKKRTVLLKEMITVYPDDFGGEDDYPRQNLKVRGHVRVRSKIIFNF 244
N +++++ LGGP K + PD + Q L + HV +R K F
Sbjct: 631 NTLDELIDQLGGPQRVAEMTGRKGRVVSRPDGTVAFESRAEQGLSI-DHVNLREKQRFMS 689
Query: 243 GHRIKALTVSANEGFV 196
G ++ A+ A+ V
Sbjct: 690 GEKLVAIISEASSSGV 705
>AC005390-2|AAC28919.1| 1384|Homo sapiens R31180_1 protein.
Length = 1384
Score = 30.7 bits (66), Expect = 7.1
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -3
Query: 423 NDFEKILETLGGPMEKKRTVLLKEMITVYPDDFGGEDDYPRQNLKVRGHVRVRSKIIFNF 244
N +++++ LGGP K + PD + Q L + HV +R K F
Sbjct: 739 NTLDELIDQLGGPQRVAEMTGRKGRVVSRPDGTVAFESRAEQGLSI-DHVNLREKQRFMS 797
Query: 243 GHRIKALTVSANEGFV 196
G ++ A+ A+ V
Sbjct: 798 GEKLVAIISEASSSGV 813
>AB023180-1|BAA76807.2| 1391|Homo sapiens KIAA0963 protein protein.
Length = 1391
Score = 30.7 bits (66), Expect = 7.1
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -3
Query: 423 NDFEKILETLGGPMEKKRTVLLKEMITVYPDDFGGEDDYPRQNLKVRGHVRVRSKIIFNF 244
N +++++ LGGP K + PD + Q L + HV +R K F
Sbjct: 757 NTLDELIDQLGGPQRVAEMTGRKGRVVSRPDGTVAFESRAEQGLSI-DHVNLREKQRFMS 815
Query: 243 GHRIKALTVSANEGFV 196
G ++ A+ A+ V
Sbjct: 816 GEKLVAIISEASSSGV 831
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,666,658
Number of Sequences: 237096
Number of extensions: 2174460
Number of successful extensions: 4488
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4478
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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