Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11h06
(857 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014296-141|AAF47417.1| 604|Drosophila melanogaster CG13886-PA... 153 4e-37
BT001782-1|AAN71537.1| 371|Drosophila melanogaster RH18867p pro... 151 2e-36
AE014296-1126|AAN12084.1| 1943|Drosophila melanogaster CG32397-P... 30 4.7
BT003244-1|AAO25001.1| 588|Drosophila melanogaster LD37218p pro... 29 6.2
AY069612-1|AAL39757.2| 354|Drosophila melanogaster LD37349p pro... 29 6.2
AY060927-1|AAL28475.1| 189|Drosophila melanogaster GM06782p pro... 29 6.2
AE014297-2750|AAF55734.3| 345|Drosophila melanogaster CG4424-PA... 29 6.2
AE014296-2002|AAF50028.1| 575|Drosophila melanogaster CG7334-PA... 29 6.2
AE014296-2001|AAS65032.1| 596|Drosophila melanogaster CG7334-PB... 29 6.2
>AE014296-141|AAF47417.1| 604|Drosophila melanogaster CG13886-PA
protein.
Length = 604
Score = 153 bits (370), Expect = 4e-37
Identities = 74/166 (44%), Positives = 112/166 (67%)
Frame = -3
Query: 606 LNLDVTTMMAYVSNMTNGHHNFIFKQEVLTQQCSWEAERPVKPILRKLFEGKKLVCCETA 427
LNLDVTT++AYVS +TNG N+++K+ +LT+Q E P+KP+L K+ EGK LVCC+ A
Sbjct: 206 LNLDVTTLLAYVSALTNGSANWVYKEPLLTEQAERERASPLKPLLEKILEGKTLVCCQLA 265
Query: 426 WNDFEKILETLGGPMEKKRTVLLKEMITVYPDDFGGEDDYPRQNLKVRGHVRVRSKIIFN 247
++ F+ IL+ +GG E+KR L + +TVYPD +++ +++ +V RS IF+
Sbjct: 266 YDAFQSILDIVGGEGERKRAEELMKRVTVYPDVETIPEEF--SHIRFTANVNERSLKIFS 323
Query: 246 FGHRIKALTVSANEGFVRAALQQGVTYAAFVHESRALTEGKEDSAR 109
FG + TV++N+ FVR+A QG+ FVH S ALTEG+E+S +
Sbjct: 324 FGMARQIFTVTSNKAFVRSAKMQGINVPVFVHASVALTEGRENSQK 369
>BT001782-1|AAN71537.1| 371|Drosophila melanogaster RH18867p
protein.
Length = 371
Score = 151 bits (365), Expect = 2e-36
Identities = 73/166 (43%), Positives = 111/166 (66%)
Frame = -3
Query: 606 LNLDVTTMMAYVSNMTNGHHNFIFKQEVLTQQCSWEAERPVKPILRKLFEGKKLVCCETA 427
LNLDVTT++AYVS +TNG N+++++ +LT+Q E P+KP+L K+ EGK LVCC+ A
Sbjct: 206 LNLDVTTLLAYVSALTNGSANWVYREPLLTEQAERERASPLKPLLEKILEGKTLVCCQLA 265
Query: 426 WNDFEKILETLGGPMEKKRTVLLKEMITVYPDDFGGEDDYPRQNLKVRGHVRVRSKIIFN 247
++ F+ IL+ +GG E+KR L + +TVYPD +++ +++ +V RS IF+
Sbjct: 266 YDAFQSILDIVGGEGERKRAEELMKRVTVYPDVETIPEEF--SHIRFTANVNERSLKIFS 323
Query: 246 FGHRIKALTVSANEGFVRAALQQGVTYAAFVHESRALTEGKEDSAR 109
FG + TV++N+ FVR+A QG+ FVH S ALTEGK+ + R
Sbjct: 324 FGMARQIFTVTSNKAFVRSAKMQGINVPVFVHASVALTEGKQATGR 369
>AE014296-1126|AAN12084.1| 1943|Drosophila melanogaster CG32397-PA
protein.
Length = 1943
Score = 29.9 bits (64), Expect = 4.7
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Frame = +3
Query: 594 HPSLEFLFQNDLCHD*AQVSLIAY*CNLIHHHCFG-NQRIH-----HHCLEQLNLVKFHP 755
H S+ L CHD A L + L HHH NQ H HH L+ NL HP
Sbjct: 123 HKSVSHLDLATSCHDAAGTGLGRHSQQLHHHHSNQVNQHHHQQQQSHHHLQHANLHSHHP 182
>BT003244-1|AAO25001.1| 588|Drosophila melanogaster LD37218p
protein.
Length = 588
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 294 LKVRGHVRVRSKIIFNFGHRIKALTVSANEGFV-RAALQQGVTYAAF 157
LK GHV S ++F FG R ++ N ++ L GVT+ F
Sbjct: 435 LKKIGHVNAMSVVLFGFGVRFILYSMLQNPWYILPIELMNGVTFGLF 481
>AY069612-1|AAL39757.2| 354|Drosophila melanogaster LD37349p
protein.
Length = 354
Score = 29.5 bits (63), Expect = 6.2
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 435 ETAWNDFEKILETLGGPMEKKR-TVLLKEMITV-YPDDFGGEDDYPRQNLKVRGHV 274
E W+ + I ET GP EK+R TVL EM+ YP P +K + HV
Sbjct: 142 EGVWSTEDPIEETPHGPAEKERPTVLTVEMLPAPYPPPASTPPPAPAGAVKGKLHV 197
>AY060927-1|AAL28475.1| 189|Drosophila melanogaster GM06782p
protein.
Length = 189
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 294 LKVRGHVRVRSKIIFNFGHRIKALTVSANEGFV-RAALQQGVTYAAF 157
LK GHV S ++F FG R ++ N ++ L GVT+ F
Sbjct: 20 LKKIGHVNAMSVVLFGFGVRFILYSMLQNPWYILPIELMNGVTFGLF 66
>AE014297-2750|AAF55734.3| 345|Drosophila melanogaster CG4424-PA
protein.
Length = 345
Score = 29.5 bits (63), Expect = 6.2
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 435 ETAWNDFEKILETLGGPMEKKR-TVLLKEMITV-YPDDFGGEDDYPRQNLKVRGHV 274
E W+ + I ET GP EK+R TVL EM+ YP P +K + HV
Sbjct: 133 EGVWSTEDPIEETPHGPAEKERPTVLTVEMLPAPYPPPASTPPPAPAGAVKGKLHV 188
>AE014296-2002|AAF50028.1| 575|Drosophila melanogaster CG7334-PA,
isoform A protein.
Length = 575
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 294 LKVRGHVRVRSKIIFNFGHRIKALTVSANEGFV-RAALQQGVTYAAF 157
LK GHV S ++F FG R ++ N ++ L GVT+ F
Sbjct: 406 LKKIGHVNAMSVVLFGFGVRFILYSMLQNPWYILPIELMNGVTFGLF 452
>AE014296-2001|AAS65032.1| 596|Drosophila melanogaster CG7334-PB,
isoform B protein.
Length = 596
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 294 LKVRGHVRVRSKIIFNFGHRIKALTVSANEGFV-RAALQQGVTYAAF 157
LK GHV S ++F FG R ++ N ++ L GVT+ F
Sbjct: 427 LKKIGHVNAMSVVLFGFGVRFILYSMLQNPWYILPIELMNGVTFGLF 473
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,359,480
Number of Sequences: 53049
Number of extensions: 700156
Number of successful extensions: 1642
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4126982652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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