Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11h06
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical pr...    81   1e-15
U41034-8|AAA82382.1|  669|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    29   5.6  
AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter o...    28   7.4  
Z70267-3|CAA94214.1|  534|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z50006-1|CAA90301.1|  190|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical
           protein F33G12.3 protein.
          Length = 403

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 3/188 (1%)
 Frame = -3

Query: 657 SKIPELNHGIDHSE--IKTLNLDVTTMMAYVSNMTN-GHHNFIFKQEVLTQQCSWEAERP 487
           + IP L      SE  +  LNLD++ +M  VSNM   G  N+ FK+E++ +    E  +P
Sbjct: 217 ASIPTLPSSQSQSESTLPRLNLDISAVMLLVSNMCEPGGVNYQFKEEMINKHVECERLKP 276

Query: 486 VKPILRKLFEGKKLVCCETAWNDFEKILETLGGPMEKKRTVLLKEMITVYPDDFGGEDDY 307
            K  + +  +G  L+ CE A+    +I++ +GGP EKKR   L + I    D    E   
Sbjct: 277 AKAEVLEKLKGHHLIMCELAYRRVAEIVKNVGGPTEKKRFEELSKTIERVQDQPSDEIGR 336

Query: 306 PRQNLKVRGHVRVRSKIIFNFGHRIKALTVSANEGFVRAALQQGVTYAAFVHESRALTEG 127
             +   ++G   + +K +F+     K  TV+AN+ F+  +  + + +       R LTE 
Sbjct: 337 VVKLRNIKGITSI-TKRVFSCAEVTKTTTVTANQKFLTHSRAKHIYFDVIEIPPRPLTEQ 395

Query: 126 KEDSARRI 103
           KE +A+ I
Sbjct: 396 KEATAKVI 403


>U41034-8|AAA82382.1|  669|Caenorhabditis elegans Hypothetical
           protein M02D8.5 protein.
          Length = 669

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +2

Query: 410 FSKSFHAVSQQTSFLPSNNFLSIGFTGLSASQEH 511
           +S  F   SQQ SFL  ++ + IG TGL+AS EH
Sbjct: 252 YSNLFFTKSQQVSFLFQSDGI-IGGTGLNASLEH 284


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -3

Query: 603 NLDVTTMMAYVSNMTNGHHNFIFKQEVLTQQCSWEAERPVKPILRKLFEGKKLVCCE 433
           ++DV+  MA +  M + HH+ + ++E L   C     +  +  +RKL + +K V  E
Sbjct: 312 SMDVSVNMASIDQMKDEHHHNLMREEELL-GCEAGRRKQSEEEVRKLSDERKRVIYE 367


>AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter of
           sr proteins protein1 protein.
          Length = 949

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 556 ICHVAHICHHGC--YIQV*SFY 615
           IC + HICH GC  Y Q+  F+
Sbjct: 18  ICAIEHICHRGCGSYAQIFIFH 39


>Z70267-3|CAA94214.1|  534|Caenorhabditis elegans Hypothetical
           protein K04C1.2b protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 249 NFGHRIKALTVSANEGFVRAALQQGVTYAAFVHESRALTEGKEDSARRIT 100
           NFG  I A  VS   G   ++ Q   + A  VH +  + +G  D + R T
Sbjct: 29  NFGKPIFATFVSKGTGNPGSSDQPSTSSAGNVHRNSTINQGANDGSERNT 78


>Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical
           protein T07C5.1c protein.
          Length = 523

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/65 (18%), Positives = 26/65 (40%)
 Frame = -3

Query: 672 CINMQSKIPELNHGIDHSEIKTLNLDVTTMMAYVSNMTNGHHNFIFKQEVLTQQCSWEAE 493
           C ++  K+PE+ H ID+     +  ++      +  + N     +   E +  + +W   
Sbjct: 122 CADLLGKLPEMQHIIDYKFDLVIYNEIDPCTPAIVRLFNIPKTVLLSSEAIMDKVAWNLG 181

Query: 492 RPVKP 478
            P  P
Sbjct: 182 LPTLP 186


>Z50006-1|CAA90301.1|  190|Caenorhabditis elegans Hypothetical
           protein T07C5.1b protein.
          Length = 190

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/63 (17%), Positives = 27/63 (42%)
 Frame = -3

Query: 672 CINMQSKIPELNHGIDHSEIKTLNLDVTTMMAYVSNMTNGHHNFIFKQEVLTQQCSWEAE 493
           C ++  K+PE+ H ID+     +  ++      +  + N     +   E +  + +W   
Sbjct: 122 CADLLGKLPEMQHIIDYKFDLVIYNEIDPCTPAIVRLFNIPKTVLLSSEAIMDKVAWNLG 181

Query: 492 RPV 484
           +P+
Sbjct: 182 KPM 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,672,197
Number of Sequences: 27780
Number of extensions: 379921
Number of successful extensions: 1247
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)