Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11h03
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348...    32   0.26 
06_01_0919 - 7090494-7091219,7091630-7091763,7091860-7091927,709...    31   0.46 
02_01_0043 + 300122-300907,301447-301722,302347-302481                 27   7.5  
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833...    27   9.9  
06_01_0031 - 305457-305663,306248-306523,306824-307609                 27   9.9  
01_03_0202 - 13762042-13762572                                         27   9.9  

>01_06_1626 -
           38734128-38734160,38734386-38734560,38734819-38734878,
           38734961-38735059,38735191-38735224,38735315-38735374,
           38735596-38735696,38735949-38736014,38736695-38736825,
           38736946-38737038,38737273-38737338,38737459-38737494,
           38738308-38738382,38738475-38738792
          Length = 448

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
 Frame = -2

Query: 291 FPMVVQIEMETI--KHHGFNNSREGIVQF-TQLIRDLESIDGEVARLHTQIRSHYLPPVS 121
           +P+ VQIE +T+    H   NS   + +F T      E    +  RLH     HYLP   
Sbjct: 124 YPLRVQIEAQTVFGALHALQNSSRLLGEFLTHQDFLTEDFLLDQMRLHADTSRHYLPVTV 183

Query: 120 ISSSVDTSL*NSIKGKTWN 64
           I   +DT   + +    W+
Sbjct: 184 IKKVIDTMAYSKLNVLHWH 202


>06_01_0919 -
           7090494-7091219,7091630-7091763,7091860-7091927,
           7092471-7092515,7092620-7092639,7092798-7092860,
           7092946-7093115,7093216-7093252
          Length = 420

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 212 SLSLFVTWRALMVRLP-VFILKSEATTCPLCPSVLLLTHLC 93
           ++  F T R+ ++ LP +F+ K + T C +C S L   + C
Sbjct: 364 TMGTFPTSRSFLLNLPLIFVCKEKDTECSICKSTLATKYRC 404


>02_01_0043 + 300122-300907,301447-301722,302347-302481
          Length = 398

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -2

Query: 384 IDALESPDYASKLDEAKEAAGNEMLKMMQIVFPMVVQIEMETIKHHGFNN 235
           +DALE PDY  +   AK +   E+  M++IV P  +  +  T+    F N
Sbjct: 350 VDALEGPDYMVR--NAKRSMLEELEGMLEIVGPQSLG-KPRTLSRRKFEN 396


>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
            29283735-29283917,29284362-29284467,29284627-29284651,
            29284736-29284855,29284920-29284997,29285646-29285774,
            29285976-29285989,29286168-29287944,29288344-29288489,
            29288921-29291029
          Length = 1747

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = -2

Query: 240  NNSREGIVQFTQLIRDLESIDGEVARLHTQIRSHYLPPVSISSSVDTSL*NSIKGKTWNS 61
            N +  GIV  TQ    L     ++  LH+ + +  L PV  ++SV   + N    KT + 
Sbjct: 1586 NGNSSGIVDRTQSSDQLIYAGKDIQGLHSSMDASNLLPVQNANSVLFGVENGTTIKTESG 1645

Query: 60   STVSGVLRFSKLAFI 16
             + +G   F   AF+
Sbjct: 1646 YSSNGNFGFCGNAFL 1660


>06_01_0031 - 305457-305663,306248-306523,306824-307609
          Length = 422

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -2

Query: 384 IDALESPDYASKLDEAKEAAGNEMLKMMQIVFP 286
           +DALE PDY  +   AK++  +E+  M++IV P
Sbjct: 350 VDALEGPDYMVR--TAKKSMLDELEGMLEIVDP 380


>01_03_0202 - 13762042-13762572
          Length = 176

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 120 WTQGAGSGFGFEYEDGQP 173
           W +G+GSG G+E   G+P
Sbjct: 104 WNRGSGSGAGWEDSSGEP 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,814,140
Number of Sequences: 37544
Number of extensions: 275321
Number of successful extensions: 711
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)