Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11h03
(550 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U47924-16|AAB51329.1| 126|Homo sapiens C10 protein. 93 6e-19
BC009925-1|AAH09925.1| 126|Homo sapiens chromosome 12 open read... 93 6e-19
BX640827-1|CAE45903.1| 1083|Homo sapiens hypothetical protein pr... 30 6.1
AF530058-1|AAQ09942.1| 912|Homo sapiens HBeAg-binding protein 3... 30 6.1
AF506799-1|AAO15881.1| 1113|Homo sapiens KIBRA protein protein. 30 6.1
AB020676-1|BAA74892.1| 888|Homo sapiens KIAA0869 protein protein. 30 6.1
CR542062-1|CAG46859.1| 373|Homo sapiens PEX3 protein. 29 8.1
BC015506-1|AAH15506.1| 373|Homo sapiens peroxisomal biogenesis ... 29 8.1
BC014551-1|AAH14551.1| 373|Homo sapiens peroxisomal biogenesis ... 29 8.1
AY277600-1|AAQ18039.1| 373|Homo sapiens transformation-related ... 29 8.1
AL031320-5|CAB53744.1| 373|Homo sapiens peroxisomal biogenesis ... 29 8.1
AJ131389-1|CAA10362.1| 373|Homo sapiens PEX3 protein protein. 29 8.1
AJ009866-1|CAA08904.1| 373|Homo sapiens Pex3p protein. 29 8.1
AJ001625-1|CAA04879.1| 373|Homo sapiens Pex3 protein protein. 29 8.1
AB035307-1|BAA97993.1| 373|Homo sapiens Pex3p protein. 29 8.1
>U47924-16|AAB51329.1| 126|Homo sapiens C10 protein.
Length = 126
Score = 93.1 bits (221), Expect = 6e-19
Identities = 39/107 (36%), Positives = 74/107 (69%)
Frame = -2
Query: 438 SSPQSVSVDQMRQILNEIIDALESPDYASKLDEAKEAAGNEMLKMMQIVFPMVVQIEMET 259
+ P ++S +Q + +L E+I A +P+ A ++DEA++ A N+M KM+Q V P+ QI+ E
Sbjct: 6 TQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQIQQEV 65
Query: 258 IKHHGFNNSREGIVQFTQLIRDLESIDGEVARLHTQIRSHYLPPVSI 118
IK +GF+ EG+++F +L++ E+ D E+A L ++++ +LPP+++
Sbjct: 66 IKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTL 112
>BC009925-1|AAH09925.1| 126|Homo sapiens chromosome 12 open reading
frame 57 protein.
Length = 126
Score = 93.1 bits (221), Expect = 6e-19
Identities = 39/107 (36%), Positives = 74/107 (69%)
Frame = -2
Query: 438 SSPQSVSVDQMRQILNEIIDALESPDYASKLDEAKEAAGNEMLKMMQIVFPMVVQIEMET 259
+ P ++S +Q + +L E+I A +P+ A ++DEA++ A N+M KM+Q V P+ QI+ E
Sbjct: 6 TQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQIQQEV 65
Query: 258 IKHHGFNNSREGIVQFTQLIRDLESIDGEVARLHTQIRSHYLPPVSI 118
IK +GF+ EG+++F +L++ E+ D E+A L ++++ +LPP+++
Sbjct: 66 IKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTL 112
>BX640827-1|CAE45903.1| 1083|Homo sapiens hypothetical protein
protein.
Length = 1083
Score = 29.9 bits (64), Expect = 6.1
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -2
Query: 207 QLIRDLESIDGEVARLHTQIRSHYLPPVSISSSVDTSL*NSIKGKTWNSS 58
QL+R+LE +VA LH+Q++S S+SS S +G SS
Sbjct: 369 QLVRELEEATRQVATLHSQLKSLSSSMQSLSSGSSPGSLTSSRGSLVASS 418
>AF530058-1|AAQ09942.1| 912|Homo sapiens HBeAg-binding protein 3
protein.
Length = 912
Score = 29.9 bits (64), Expect = 6.1
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -2
Query: 207 QLIRDLESIDGEVARLHTQIRSHYLPPVSISSSVDTSL*NSIKGKTWNSS 58
QL+R+LE +VA LH+Q++S S+SS S +G SS
Sbjct: 203 QLVRELEEATRQVATLHSQLKSLSSSMQSLSSGSSPGSLTSSRGSLVASS 252
>AF506799-1|AAO15881.1| 1113|Homo sapiens KIBRA protein protein.
Length = 1113
Score = 29.9 bits (64), Expect = 6.1
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -2
Query: 207 QLIRDLESIDGEVARLHTQIRSHYLPPVSISSSVDTSL*NSIKGKTWNSS 58
QL+R+LE +VA LH+Q++S S+SS S +G SS
Sbjct: 404 QLVRELEEATRQVATLHSQLKSLSSSMQSLSSGSSPGSLTSSRGSLVASS 453
>AB020676-1|BAA74892.1| 888|Homo sapiens KIAA0869 protein protein.
Length = 888
Score = 29.9 bits (64), Expect = 6.1
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -2
Query: 207 QLIRDLESIDGEVARLHTQIRSHYLPPVSISSSVDTSL*NSIKGKTWNSS 58
QL+R+LE +VA LH+Q++S S+SS S +G SS
Sbjct: 180 QLVRELEEATRQVATLHSQLKSLSSSMQSLSSGSSPGSLTSSRGSLVASS 229
>CR542062-1|CAG46859.1| 373|Homo sapiens PEX3 protein.
Length = 373
Score = 29.5 bits (63), Expect = 8.1
Identities = 21/90 (23%), Positives = 43/90 (47%)
Frame = -2
Query: 402 QILNEIIDALESPDYASKLDEAKEAAGNEMLKMMQIVFPMVVQIEMETIKHHGFNNSREG 223
++LNE D LESPD+++ L+ + +L M F Q ++H NS
Sbjct: 262 KLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQ----DLQHGNSMNSLSS 317
Query: 222 IVQFTQLIRDLESIDGEVARLHTQIRSHYL 133
+ L + + ++G++ + ++ SH++
Sbjct: 318 V--SLPLAKIIPIVNGQIHSVCSETPSHFV 345
>BC015506-1|AAH15506.1| 373|Homo sapiens peroxisomal biogenesis
factor 3 protein.
Length = 373
Score = 29.5 bits (63), Expect = 8.1
Identities = 21/90 (23%), Positives = 43/90 (47%)
Frame = -2
Query: 402 QILNEIIDALESPDYASKLDEAKEAAGNEMLKMMQIVFPMVVQIEMETIKHHGFNNSREG 223
++LNE D LESPD+++ L+ + +L M F Q ++H NS
Sbjct: 262 KLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQ----DLQHGNSMNSLSS 317
Query: 222 IVQFTQLIRDLESIDGEVARLHTQIRSHYL 133
+ L + + ++G++ + ++ SH++
Sbjct: 318 V--SLPLAKIIPIVNGQIHSVCSETPSHFV 345
>BC014551-1|AAH14551.1| 373|Homo sapiens peroxisomal biogenesis
factor 3 protein.
Length = 373
Score = 29.5 bits (63), Expect = 8.1
Identities = 21/90 (23%), Positives = 43/90 (47%)
Frame = -2
Query: 402 QILNEIIDALESPDYASKLDEAKEAAGNEMLKMMQIVFPMVVQIEMETIKHHGFNNSREG 223
++LNE D LESPD+++ L+ + +L M F Q ++H NS
Sbjct: 262 KLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQ----DLQHGNSMNSLSS 317
Query: 222 IVQFTQLIRDLESIDGEVARLHTQIRSHYL 133
+ L + + ++G++ + ++ SH++
Sbjct: 318 V--SLPLAKIIPIVNGQIHSVCSETPSHFV 345
>AY277600-1|AAQ18039.1| 373|Homo sapiens transformation-related
protein 18 protein.
Length = 373
Score = 29.5 bits (63), Expect = 8.1
Identities = 21/90 (23%), Positives = 43/90 (47%)
Frame = -2
Query: 402 QILNEIIDALESPDYASKLDEAKEAAGNEMLKMMQIVFPMVVQIEMETIKHHGFNNSREG 223
++LNE D LESPD+++ L+ + +L M F Q ++H NS
Sbjct: 262 KLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQ----DLQHGNSMNSLSS 317
Query: 222 IVQFTQLIRDLESIDGEVARLHTQIRSHYL 133
+ L + + ++G++ + ++ SH++
Sbjct: 318 V--SLPLAKIIPIVNGQIHSVCSETPSHFV 345
>AL031320-5|CAB53744.1| 373|Homo sapiens peroxisomal biogenesis
factor 3 protein.
Length = 373
Score = 29.5 bits (63), Expect = 8.1
Identities = 21/90 (23%), Positives = 43/90 (47%)
Frame = -2
Query: 402 QILNEIIDALESPDYASKLDEAKEAAGNEMLKMMQIVFPMVVQIEMETIKHHGFNNSREG 223
++LNE D LESPD+++ L+ + +L M F Q ++H NS
Sbjct: 262 KLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQ----DLQHGNSMNSLSS 317
Query: 222 IVQFTQLIRDLESIDGEVARLHTQIRSHYL 133
+ L + + ++G++ + ++ SH++
Sbjct: 318 V--SLPLAKIIPIVNGQIHSVCSETPSHFV 345
>AJ131389-1|CAA10362.1| 373|Homo sapiens PEX3 protein protein.
Length = 373
Score = 29.5 bits (63), Expect = 8.1
Identities = 21/90 (23%), Positives = 43/90 (47%)
Frame = -2
Query: 402 QILNEIIDALESPDYASKLDEAKEAAGNEMLKMMQIVFPMVVQIEMETIKHHGFNNSREG 223
++LNE D LESPD+++ L+ + +L M F Q ++H NS
Sbjct: 262 KLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQ----DLQHGNSMNSLSS 317
Query: 222 IVQFTQLIRDLESIDGEVARLHTQIRSHYL 133
+ L + + ++G++ + ++ SH++
Sbjct: 318 V--SLPLAKIIPIVNGQIHSVCSETPSHFV 345
>AJ009866-1|CAA08904.1| 373|Homo sapiens Pex3p protein.
Length = 373
Score = 29.5 bits (63), Expect = 8.1
Identities = 21/90 (23%), Positives = 43/90 (47%)
Frame = -2
Query: 402 QILNEIIDALESPDYASKLDEAKEAAGNEMLKMMQIVFPMVVQIEMETIKHHGFNNSREG 223
++LNE D LESPD+++ L+ + +L M F Q ++H NS
Sbjct: 262 KLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQ----DLQHGNSMNSLSS 317
Query: 222 IVQFTQLIRDLESIDGEVARLHTQIRSHYL 133
+ L + + ++G++ + ++ SH++
Sbjct: 318 V--SLPLAKIIPIVNGQIHSVCSETPSHFV 345
>AJ001625-1|CAA04879.1| 373|Homo sapiens Pex3 protein protein.
Length = 373
Score = 29.5 bits (63), Expect = 8.1
Identities = 21/90 (23%), Positives = 43/90 (47%)
Frame = -2
Query: 402 QILNEIIDALESPDYASKLDEAKEAAGNEMLKMMQIVFPMVVQIEMETIKHHGFNNSREG 223
++LNE D LESPD+++ L+ + +L M F Q ++H NS
Sbjct: 262 KLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQ----DLQHGNSMNSLSS 317
Query: 222 IVQFTQLIRDLESIDGEVARLHTQIRSHYL 133
+ L + + ++G++ + ++ SH++
Sbjct: 318 V--SLPLAKIIPIVNGQIHSVCSETPSHFV 345
>AB035307-1|BAA97993.1| 373|Homo sapiens Pex3p protein.
Length = 373
Score = 29.5 bits (63), Expect = 8.1
Identities = 21/90 (23%), Positives = 43/90 (47%)
Frame = -2
Query: 402 QILNEIIDALESPDYASKLDEAKEAAGNEMLKMMQIVFPMVVQIEMETIKHHGFNNSREG 223
++LNE D LESPD+++ L+ + +L M F Q ++H NS
Sbjct: 262 KLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQ----DLQHGNSMNSLSS 317
Query: 222 IVQFTQLIRDLESIDGEVARLHTQIRSHYL 133
+ L + + ++G++ + ++ SH++
Sbjct: 318 V--SLPLAKIIPIVNGQIHSVCSETPSHFV 345
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,387,567
Number of Sequences: 237096
Number of extensions: 1610461
Number of successful extensions: 3204
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3204
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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