Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11g24
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    27   3.1  
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...    27   3.1  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    27   4.1  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    27   4.1  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   7.2  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   9.5  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    25   9.5  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    25   9.5  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 353 NQMVFCDTGEGNYGAALMVYRIPDV--EEPQELHTQHSSRFNIQ 228
           NQMV CD   G Y A  ++YR  DV   + Q   T   SR  IQ
Sbjct: 304 NQMVKCDPRTGRYMATCLLYR-GDVIPRDVQAAVTSIKSRRTIQ 346


>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = -1

Query: 570 PEILQDLYSRFEESLQAQRYSKRTDKSRDS 481
           PE+ +DLY+  ++++  +++ +R  K +DS
Sbjct: 82  PELPEDLYNLIKKAVSVRKHLERNRKDKDS 111


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 700 IRMMSNPTSWSVPSLTAAIDILSFI 774
           + ++ NP+  ++  L  AIDIL+F+
Sbjct: 645 VHLLINPSEQTIEQLNTAIDILNFV 669


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 353 NQMVFCDTGEGNYGAALMVYR 291
           NQMV CD   G Y A  ++YR
Sbjct: 300 NQMVKCDPRAGRYMATCLLYR 320


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 292 GYRTLKNPKSYTLSIHPDLI 233
           GY  L+ P  Y  SIHP+L+
Sbjct: 292 GYAILEPPPGYLESIHPELL 311


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 572 RRALRKYTPASLLRCKISLLMCRARCELS 658
           RR ++ Y+P S L+CK+  +   +   LS
Sbjct: 332 RRLVQYYSPVSFLQCKVDKISFYSNSSLS 360


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 686 AFSRTFSRIKITHNELYTSVMKFYNEVEKPV 594
           A  R   +I+    +LY S  K+++EVEK V
Sbjct: 121 AILRMIVKIRNKDPDLYDSQQKYFDEVEKDV 151


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = -1

Query: 645 RALHISNEILQRSREAGVYLRSARRPEILQDLYSRFEESLQAQ 517
           R +H+++    ++  +G+Y      P +L   ++R+ +S  AQ
Sbjct: 178 RIVHVASIAYLQAPYSGIYFPDLNLPHVLLGTFARYGQSKYAQ 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,217
Number of Sequences: 5004
Number of extensions: 64085
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)