Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11g24
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0319 - 4291144-4293402                                           31   1.4  
12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129...    29   4.3  
11_01_0172 - 1383568-1384440,1385336-1385401,1385470-1385505,138...    29   4.3  
06_03_0655 + 23176075-23176470,23176573-23176710,23177506-231775...    29   4.3  
03_02_0120 - 5728572-5728712,5728812-5728916,5729178-5729441,572...    29   4.3  
03_05_0871 + 28396964-28399843                                         28   7.6  
01_01_0030 + 226182-226634,226742-226864,227557-227785,228653-22...    28   7.6  
10_05_0111 + 9257161-9257931                                           28   10.0 
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448...    28   10.0 
08_01_0117 + 941334-941339,941720-941906,942444-942565,942648-94...    28   10.0 
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    28   10.0 

>04_01_0319 - 4291144-4293402
          Length = 752

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 376 IISDIWLTIRWFSAIPA-KGIMVLHSWYTGYRTLKNPKSYTLSIHPDLISNLL 221
           I +DI+L+    + + A +   VL  W  G RTL N   + L++ PD++  L+
Sbjct: 511 IATDIYLSQSVKAIVAAVEDDAVLARWLMGIRTLSNYMMHLLAVRPDMLPGLV 563


>12_01_0173 -
           1292164-1293036,1294063-1294098,1294195-1294334,
           1295592-1295748,1295862-1296035,1296146-1296396,
           1299446-1299590
          Length = 591

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -1

Query: 675 YIQPHKDNSQRALHISNEILQRS-REAGVYLRSARR--PEILQDLY 547
           Y   +KD     L++SN+ILQ S R+ G ++    R  P +L+D Y
Sbjct: 73  YNSANKDKKVSFLYLSNDILQNSKRKGGEFVNEFWRVLPGLLKDFY 118


>11_01_0172 -
           1383568-1384440,1385336-1385401,1385470-1385505,
           1385604-1385743,1386978-1387134,1387245-1387418,
           1387540-1387790,1390296-1390446
          Length = 615

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -1

Query: 675 YIQPHKDNSQRALHISNEILQRS-REAGVYLRSARR--PEILQDLY 547
           Y   +KD     L++SN+ILQ S R+ G ++    R  P +L+D Y
Sbjct: 75  YNSANKDKKVSFLYLSNDILQNSKRKGGEFVNEFWRVLPGLLKDFY 120


>06_03_0655 +
           23176075-23176470,23176573-23176710,23177506-23177574,
           23177652-23177723,23177973-23178055,23178135-23178266,
           23178407-23178617,23179233-23179262
          Length = 376

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 359 VDNQMVFCDTGEGNYGAALMVYRIPDVEEPQELHTQHSSRFNIQ 228
           + N   F   G G+    L +Y+ PD+E P+ L  + ++ + I+
Sbjct: 184 IQNNEYFSFEGLGDVFKQLRIYKTPDIETPKYLILKRTANYEIR 227


>03_02_0120 -
           5728572-5728712,5728812-5728916,5729178-5729441,
           5729809-5729958,5730070-5730150,5730481-5730597,
           5730679-5730831,5731426-5731569,5731773-5731802,
           5732070-5732430,5732682-5732849,5733371-5733600,
           5734088-5734194,5734275-5734623
          Length = 799

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -1

Query: 624 EILQRSREAGV-YLRSARRPEILQDLYSRFEESLQA 520
           +I++R  E G+ Y+ +  R  IL D Y ++EESLQA
Sbjct: 225 DIIRRLFERGLAYVGTDYRSNILWDEYIKYEESLQA 260


>03_05_0871 + 28396964-28399843
          Length = 959

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 679 ENAHFSCIRMMSNPTSWSVPSLTAAIDILSFIQILKL 789
           E+ HFSCI+ ++   SW V S   ++  L+ +  LKL
Sbjct: 827 EDPHFSCIKSITLSGSWIVLSPMESLGSLTTLYELKL 863


>01_01_0030 +
           226182-226634,226742-226864,227557-227785,228653-228696
          Length = 282

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 344 VFCDTGEGNYGAALMVYRIPDVEEPQELHTQH 249
           ++C  GE NY  A+   ++  V   ++ HTQH
Sbjct: 121 IYCKAGEDNYSLAVRDGKVCLVRSDRDDHTQH 152


>10_05_0111 + 9257161-9257931
          Length = 256

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 315 IIPFAGIAENHLIVNQISDIINFI*FLEA*FIG 413
           I+ F GI+ +HL +N I  I NF+   EA F+G
Sbjct: 77  ILSFYGISLHHLNLNSIVHIANFVHVCEA-FLG 108


>08_01_0514 +
           4481383-4481903,4482532-4484590,4485038-4485107,
           4485434-4485660,4486238-4486324,4486408-4487114,
           4487206-4487270,4487323-4487837,4487898-4487991,
           4488116-4488398,4488494-4488689,4488913-4489254
          Length = 1721

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 313 VLHSWYTGYRTLKNPKSYTLSIHP 242
           V H W+ G RTL  PK  T S+ P
Sbjct: 904 VAHGWWAGLRTLTRPKVVT-SVRP 926


>08_01_0117 +
           941334-941339,941720-941906,942444-942565,942648-942656,
           942965-943067,943204-943247,943487-943516,943615-943737,
           943816-943841,943934-944015,944137-944178,944259-944292,
           944424-944451,944779-945022,945023-945124,945318-945443,
           945533-945715,945803-945961
          Length = 549

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 641 LYTSVMKFYNEVEKPVCIYEALGVRRYFKIY 549
           LY  V+ F+ +V + +C+   L +R +FK++
Sbjct: 350 LYLLVLSFHLQVNRIMCLIVTLSLRAFFKMH 380


>06_03_0867 +
           25534760-25539620,25540662-25540857,25540957-25541104,
           25541673-25541751,25542151-25542238,25542330-25542600,
           25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 170 HHHPETPFNHLARHHHRQ 223
           HHHP     H   HHH+Q
Sbjct: 68  HHHPPPRVQHHHHHHHQQ 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,874,478
Number of Sequences: 37544
Number of extensions: 387689
Number of successful extensions: 941
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)