Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11g24
         (804 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC094780-1|AAH94780.1|  320|Homo sapiens VGLL3 protein protein.        31   4.9  
X01703-1|CAA25855.1|  451|Homo sapiens alpha-tubulin protein.          30   8.5  
K00558-1|AAA91576.1|  451|Homo sapiens protein ( human alpha-tub...    30   8.5  
K00557-1|AAA91575.1|  342|Homo sapiens alpha-tubulin protein.          30   8.5  

>BC094780-1|AAH94780.1|  320|Homo sapiens VGLL3 protein protein.
          Length = 320

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 131 PNSHHIT*SILSKHHHPETPFNHLARHHH 217
           P+  H+   +  +HHHP    +H  RHHH
Sbjct: 217 PSYSHMH-DVYMRHHHPHAHMHHRHRHHH 244


>X01703-1|CAA25855.1|  451|Homo sapiens alpha-tubulin protein.
          Length = 451

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 353 NQMVFCDTGEGNYGAALMVYR 291
           NQMV CD G G Y A  ++YR
Sbjct: 300 NQMVKCDPGHGKYMACCLLYR 320


>K00558-1|AAA91576.1|  451|Homo sapiens protein ( human
           alpha-tubulin mRNA, complete cds. ).
          Length = 451

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 353 NQMVFCDTGEGNYGAALMVYR 291
           NQMV CD G G Y A  ++YR
Sbjct: 300 NQMVKCDPGHGKYMACCLLYR 320


>K00557-1|AAA91575.1|  342|Homo sapiens alpha-tubulin protein.
          Length = 342

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 353 NQMVFCDTGEGNYGAALMVYR 291
           NQMV CD G G Y A  ++YR
Sbjct: 191 NQMVKCDPGHGKYMACCLLYR 211


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,166,736
Number of Sequences: 237096
Number of extensions: 2145034
Number of successful extensions: 4278
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4255
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)