Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11g24
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    27   0.27 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.82 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.5  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 23/65 (35%), Positives = 30/65 (46%)
 Frame = -1

Query: 660 KDNSQRALHISNEILQRSREAGVYLRSARRPEILQDLYSRFEESLQAQRYSKRTDKSRDS 481
           KD     LH   E L   R +    R +R  E  Q  Y   E S +  R + + ++SRD 
Sbjct: 248 KDRQYEKLHNEKEKLLEERTSRK--RYSRSREREQRSYKN-ENSYRKYRETSK-ERSRDR 303

Query: 480 IERER 466
           IERER
Sbjct: 304 IERER 308


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
 Frame = +3

Query: 531 ILQSDYINLEVSPDAERFVNTHRLLY--FVVKFHY*CVELVVSYLYAAECTRKCT----F 692
           +L+ D++     PD+  F N   + +    +  HY  +    + LY  + T K +    F
Sbjct: 109 LLEVDWLKNMWRPDSF-FKNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNF 167

Query: 693 LLYPHDE*SDELVRSLLDGGYRHLILHPDPQI 788
           L+YPHD    +L    L      +I   DP +
Sbjct: 168 LIYPHDTQECKLQMESLSHTTDEMIFQWDPDV 199


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 712 SNPTSWSVPSLTAAID 759
           SNPT WS  ++T A++
Sbjct: 567 SNPTPWSEDAMTEALE 582



 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 356 DNQMVFCDTGEGNYG 312
           +N  +FC TG G+YG
Sbjct: 268 NNGDMFCHTGLGHYG 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,178
Number of Sequences: 438
Number of extensions: 4739
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)