Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11g23
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 78 2e-15
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 50 3e-07
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 48 1e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 2e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 35 0.015
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 35 0.015
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.33
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.43
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 0.75
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 5.3
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 26 5.3
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 7.0
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 7.0
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 9.3
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 9.3
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 9.3
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 77.8 bits (183), Expect = 2e-15
Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Frame = -1
Query: 763 GHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGRES--------ATQTCYNCNKSGH 617
GH+ R+C SP+ CY C + GHIAR+C G++S + CY C GH
Sbjct: 67 GHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGH 126
Query: 616 ISRNCPDGTKTCYVCGKPGHISRECDEA 533
+R+C G K CY CGK GH S EC +A
Sbjct: 127 QARDCTMGVK-CYSCGKIGHRSFECQQA 153
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/79 (45%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Frame = -1
Query: 763 GHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK- 587
GH AREC + CYNCN+TGH A C E +E +TCY C +GH+ R+CP
Sbjct: 26 GHQARECTKGS---ICYNCNQTGHKASECTEPQQE---KTCYACGTAGHLVRDCPSSPNP 79
Query: 586 ----TCYVCGKPGHISREC 542
CY CG+ GHI+R+C
Sbjct: 80 RQGAECYKCGRVGHIARDC 98
Score = 74.1 bits (174), Expect = 2e-14
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = -1
Query: 724 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHIS 551
P CYNC + GH AR C +G CYNCN++GH + C P KTCY CG GH+
Sbjct: 17 PRCYNCGENGHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70
Query: 550 RECDEARN 527
R+C + N
Sbjct: 71 RDCPSSPN 78
Score = 71.3 bits (167), Expect = 1e-13
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 13/88 (14%)
Frame = -1
Query: 766 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC-PDGT 590
TGH A EC + E +CY C GH+ R+CP CY C + GHI+R+C +G
Sbjct: 44 TGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQ 103
Query: 589 KT------------CYVCGKPGHISREC 542
++ CY CG GH +R+C
Sbjct: 104 QSGGRFGGHRSNMNCYACGSYGHQARDC 131
Score = 50.0 bits (114), Expect = 4e-07
Identities = 23/54 (42%), Positives = 29/54 (53%)
Frame = -1
Query: 763 GHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 602
GH AR+C CY+C K GH + C + S Q CY CN+ GHI+ NC
Sbjct: 125 GHQARDCTMGV---KCYSCGKIGHRSFECQQA---SDGQLCYKCNQPGHIAVNC 172
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 50.4 bits (115), Expect = 3e-07
Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -1
Query: 718 CYNCNKTGHIARNCPEGGRESATQTCYNCNK-SGHISRNCPDGTKTCYVCGKPGHISREC 542
C+NC GHI+++CP C C HIS CP TK C CG GHI+ C
Sbjct: 89 CHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIAARC 140
Query: 541 DEAR 530
E R
Sbjct: 141 SEPR 144
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/54 (37%), Positives = 24/54 (44%)
Frame = -1
Query: 760 HIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 599
HI+ C P C NC GHIA C E R+ + C C+ H S CP
Sbjct: 116 HISVRC---PWTKKCMNCGLLGHIAARCSE-PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 670 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGK-PGHISREC 542
G S + C+NC +GHIS++CP C CG HIS C
Sbjct: 80 GSDPSESIVCHNCKGNGHISKDCPH--VLCTTCGAIDDHISVRC 121
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = -1
Query: 751 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC----PDGTKT 584
R Q + C+ C + GHI ++CPE + C+ C H C P
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 583 CYVCGKPGHISRECDE 536
C++C + GH+S +C++
Sbjct: 126 CFICHENGHLSGQCEQ 141
Score = 28.7 bits (61), Expect = 0.99
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 589 KTCYVCGKPGHISRECDEARN 527
K C+ C + GHI ++C EA++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKD 97
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = -1
Query: 763 GHIARECAQSPDE--PS---CYNCNKTGHIARNCPEGGRESAT 650
GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 718 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 599
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = -1
Query: 664 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEARN*PQPP 512
R+ Q C NC GH +CP+ C CG GHI+R+C R+ QPP
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC-PVRD-QQPP 357
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 34.7 bits (76), Expect = 0.015
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 619 HISRNCPDGTKTCYVCGKPGHISREC 542
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 34.7 bits (76), Expect = 0.015
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 619 HISRNCPDGTKTCYVCGKPGHISREC 542
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.33
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = -1
Query: 682 NCPEGGRESATQTCYN----CNKSGHISRNCPDGTKTCYVC 572
+CP+G E T C+N C +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 29.9 bits (64), Expect = 0.43
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -1
Query: 739 QSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCN-KSGHISRNCPDGTKTCYVCG 569
++ ++P+ N + N + T TC NC ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.75
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 667 GRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKP 563
GR+ T+ C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -1
Query: 739 QSPDEPSCYNCNKTGHIARN--CPEGGR 662
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = -1
Query: 751 RECAQSPDEPS-----CYNCNKTGHIARNCP 674
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 643 CYNCNKSGHISRNCPDGTKTCYVCGKP 563
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 159 HGTPASNLSFDKKICTKYIKYILCNAKNCNATPSIVQ 269
HG P S +S K+C + + N +N A PS+V+
Sbjct: 210 HGQPESTMSRKPKLCVQ--SKSMTNIRNSVAKPSLVR 244
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 358 YKSTVEPHSSVCGADAALHLYCNRLSCVARGVL 456
Y +T EP ++ GA+ L + R +A+G+L
Sbjct: 50 YDNTWEPEQNLFGAEKVLKKWKKRKKLIAKGLL 82
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 319 KNKHERASTRPSIYKSTVEPHSS 387
K+KH S+ YK+ VEPH S
Sbjct: 16 KSKHASKSSLKEKYKNEVEPHRS 38
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 9.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 670 GGRESATQTCYNCNKSG 620
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 601 PDGTKTCYVCGKPGHISRECDEARN 527
PDGT YV +PG IS +A N
Sbjct: 64 PDGTTMVYVFPRPGTISPWSSKATN 88
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 634 SYSRSASQTPAPPRDSSVRCGPSCCSCN 717
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,363
Number of Sequences: 5004
Number of extensions: 55508
Number of successful extensions: 198
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -