Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11g22
(842 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 66 4e-12
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 62 1e-10
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 31 0.27
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 27 2.5
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 27 2.5
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 4.4
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 27 4.4
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 26 5.8
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil... 26 7.7
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 7.7
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 26 7.7
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 26 7.7
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 66.5 bits (155), Expect = 4e-12
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 3/167 (1%)
Frame = -3
Query: 747 KHLKPDTEIYGVETDKTCSMVESLRKNERIHLDIDSTIAEGLAVNVVGTNTFYNIKGLVD 568
K + P ++ GVET ++ +SL+ +R+ L A+G AV +VG TF + +D
Sbjct: 285 KRIAPHVKVIGVETFDADALKKSLKDKKRVTLKEVGLFADGTAVKLVGEETFRLVSKNID 344
Query: 567 KIVVVKEDWVARAIMHIXXXXXXXXXXXXXXXXXAI---MAGLFPNLKGKKVVCIISGGN 397
+V+V +D + AI + + +A P VCI+SG N
Sbjct: 345 DVVLVDKDEICAAIKDVFLDTRSVVEPSGAMAVAGMKRYVAKHKPKNPNAAQVCILSGAN 404
Query: 396 IDVTILARALERGMAAEGRLVKFKVTVHDRPGGMAELCTLLTNSGIT 256
+D L ER + V VT+ +RPG L ++T IT
Sbjct: 405 MDFDRLRFIAERADLGLNKEVFLSVTIPERPGSFEALHNIITPRSIT 451
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 62.1 bits (144), Expect = 1e-10
Identities = 39/129 (30%), Positives = 59/129 (45%)
Frame = -3
Query: 747 KHLKPDTEIYGVETDKTCSMVESLRKNERIHLDIDSTIAEGLAVNVVGTNTFYNIKGLVD 568
+H P+ E+YGVE + +S RK +H+D TIA+G +G TF IK VD
Sbjct: 196 RHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSIIKEKVD 255
Query: 567 KIVVVKEDWVARAIMHIXXXXXXXXXXXXXXXXXAIMAGLFPNLKGKKVVCIISGGNIDV 388
I+ V ++ + + A A + LK K++ IISGGN+D+
Sbjct: 256 DILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARA-MKEKLKNKRIGIIISGGNVDI 314
Query: 387 TILARALER 361
A L +
Sbjct: 315 ERYAHFLSQ 323
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 30.7 bits (66), Expect = 0.27
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = -3
Query: 729 TEIYGVETDKTCSMVESLRKNERIHLDIDSTIAEGLAVNV 610
+E+Y +E KT +++++LRK+ + + ++ I EG V V
Sbjct: 101 SEVYSLEMSKTEALLQALRKSIGVRIKEETEIIEGEVVEV 140
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 248 SRIVIPELVRSVHSSAMPPGRSWTV-TL-NFTNR 343
+++V+P L S SS PP +S+ + TL NF NR
Sbjct: 568 TQVVVPHLTESYGSSQDPPEKSFPICTLKNFPNR 601
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 156 ELIEQIKKHYKDYFFQEICDRPDRPSVGTRRG 61
E+ +K +Y Y +EIC++PD + T RG
Sbjct: 328 EIASVMKGNYDHYMIKEICEQPD-SLLNTMRG 358
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 266 ELVRSVHSSAMPPGRSWTVTLNFTNRPSAAIPRSNARARIVTSIL 400
EL ++ S++ + LN N P AA P SN + VTSIL
Sbjct: 761 ELAQNKQQSSVTTASPRSNALN-ANTPKAAAPSSNVTMKNVTSIL 804
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/88 (19%), Positives = 36/88 (40%)
Frame = +2
Query: 173 PLVSAITLTWALNTSPLTQARSGTQSRIVIPELVRSVHSSAMPPGRSWTVTLNFTNRPSA 352
P+ + T T+P+ + + +I +V ++ + GRS T+ T A
Sbjct: 194 PMAAMTTPMEETTTTPMEETTTTPMVETMITPMVEAMTTPTEVVGRSMVSTIRTTTPMEA 253
Query: 353 AIPRSNARARIVTSILPPEIMQTTFFPL 436
I + + T+ + + +TT P+
Sbjct: 254 MITPTVETTTLPTAAMTTPVEETTTTPM 281
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 26.6 bits (56), Expect = 4.4
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +2
Query: 167 SQPLVSAIT-LTWALNTSPLTQARSGTQSRIVIPELVRSVHSSAM-PPGRSWTVTLNFTN 340
SQ L++A +T LNTSPL + +S V P +S + PP + + N
Sbjct: 585 SQGLLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPASVLAPPSSASLSSSKDAN 644
Query: 341 RPSAAIPRSNARARI 385
R PR + R+
Sbjct: 645 RSVPESPRREKKNRV 659
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 291 ELCTLLTNSGITIRDCVPERA-WVKGDVFSAQVKVIAETRGWEHTKELIEQIKKHYK 124
E+ LL N+ +RD + A V +V + +K+ A+ R +ELI I KH K
Sbjct: 179 EMFFLLLNNASALRDISQKHAAHVVINVTNNNIKIEAKKRDVAIVEELISGIFKHLK 235
>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 7.7
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +1
Query: 409 DYANDFLSFKIGEQSRHNGGNGHSAGTFHDKSLLFYYMHDGPSHPIFLYNHYFVYKTFDI 588
DY N SF G + G S K +YY H P +FL + + +TF +
Sbjct: 134 DYQNHNQSFPFGIS--YEGFYYISFSQSTGKIKGYYYHHSEPEKVLFLELNPIIDRTFPV 191
Query: 589 VE 594
+E
Sbjct: 192 IE 193
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 505 LLFYYMHDGPSHPIFLYNHYFVYKTF 582
LL ++D S+ I+LY Y +YKT+
Sbjct: 9 LLDELLNDSSSNMIWLYEVYMLYKTY 34
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 245 QSRIVIPELVRSVHSSAMPPGRSWTVTLNFTNRPS 349
++R ++PE R HSS +PP ++ + N PS
Sbjct: 100 ETRPLLPE--REEHSSQLPPAQNQVLPFQSLNAPS 132
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 421 DFLSFKIGEQSRHNGGNGHSA--GTFHDKSLLFYYMHDGPSHPI 546
DF + +G + N G G S GT HD F DG +H +
Sbjct: 2 DFANVYLGLDTLGNEGYGASVSNGTHHDFHFNFNTFRDGGNHEV 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,719,547
Number of Sequences: 5004
Number of extensions: 81630
Number of successful extensions: 229
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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