Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11g22
(842 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457300-1|CAG33581.1| 340|Homo sapiens SRR protein. 54 6e-07
BC074728-1|AAH74728.1| 340|Homo sapiens serine racemase protein. 54 6e-07
AY034081-1|AAK58495.1| 340|Homo sapiens serine racemase protein. 54 6e-07
AL834378-1|CAD39041.1| 288|Homo sapiens hypothetical protein pr... 54 6e-07
AK023169-1|BAB14442.1| 340|Homo sapiens protein ( Homo sapiens ... 54 6e-07
AF169974-1|AAG27081.1| 340|Homo sapiens serine racemase protein. 54 6e-07
AK223120-1|BAD96840.1| 340|Homo sapiens serine racemase variant... 53 1e-06
AY358101-1|AAQ88468.1| 85|Homo sapiens Wpep3002 protein. 31 5.2
>CR457300-1|CAG33581.1| 340|Homo sapiens SRR protein.
Length = 340
Score = 54.0 bits (124), Expect = 6e-07
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Frame = -3
Query: 828 LSNYPNVDAVLIPXXXXXXXXXXXXXVKHLKPDTEIYGVETDKTCSMVESLRKNERI-HL 652
L+ P VDA+++P VK LKP ++Y E +S K + + +L
Sbjct: 171 LNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNL 230
Query: 651 DIDSTIAEGLAVNVVGTNTFYNIKGLVDKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXX 472
TIA+G+ + +G NT+ I+ LVD I V ED + A +
Sbjct: 231 YPPETIADGVK-SSIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVG 289
Query: 471 XXAIMAGLFPNLKGK-KVVCII-SGGNIDVT 385
A+++ F + + K +CI+ SGGN+D+T
Sbjct: 290 VAAVLSQHFQTVSPEVKNICIVLSGGNVDLT 320
>BC074728-1|AAH74728.1| 340|Homo sapiens serine racemase protein.
Length = 340
Score = 54.0 bits (124), Expect = 6e-07
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Frame = -3
Query: 828 LSNYPNVDAVLIPXXXXXXXXXXXXXVKHLKPDTEIYGVETDKTCSMVESLRKNERI-HL 652
L+ P VDA+++P VK LKP ++Y E +S K + + +L
Sbjct: 171 LNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNL 230
Query: 651 DIDSTIAEGLAVNVVGTNTFYNIKGLVDKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXX 472
TIA+G+ + +G NT+ I+ LVD I V ED + A +
Sbjct: 231 YPPETIADGVK-SSIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVG 289
Query: 471 XXAIMAGLFPNLKGK-KVVCII-SGGNIDVT 385
A+++ F + + K +CI+ SGGN+D+T
Sbjct: 290 VAAVLSQHFQTVSPEVKNICIVLSGGNVDLT 320
>AY034081-1|AAK58495.1| 340|Homo sapiens serine racemase protein.
Length = 340
Score = 54.0 bits (124), Expect = 6e-07
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Frame = -3
Query: 828 LSNYPNVDAVLIPXXXXXXXXXXXXXVKHLKPDTEIYGVETDKTCSMVESLRKNERI-HL 652
L+ P VDA+++P VK LKP ++Y E +S K + + +L
Sbjct: 171 LNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNL 230
Query: 651 DIDSTIAEGLAVNVVGTNTFYNIKGLVDKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXX 472
TIA+G+ + +G NT+ I+ LVD I V ED + A +
Sbjct: 231 YPPETIADGVK-SSIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVG 289
Query: 471 XXAIMAGLFPNLKGK-KVVCII-SGGNIDVT 385
A+++ F + + K +CI+ SGGN+D+T
Sbjct: 290 VAAVLSQHFQTVSPEVKNICIVLSGGNVDLT 320
>AL834378-1|CAD39041.1| 288|Homo sapiens hypothetical protein
protein.
Length = 288
Score = 54.0 bits (124), Expect = 6e-07
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Frame = -3
Query: 828 LSNYPNVDAVLIPXXXXXXXXXXXXXVKHLKPDTEIYGVETDKTCSMVESLRKNERI-HL 652
L+ P VDA+++P VK LKP ++Y E +S K + + +L
Sbjct: 119 LNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNL 178
Query: 651 DIDSTIAEGLAVNVVGTNTFYNIKGLVDKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXX 472
TIA+G+ + +G NT+ I+ LVD I V ED + A +
Sbjct: 179 YPPETIADGVK-SSIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVG 237
Query: 471 XXAIMAGLFPNLKGK-KVVCII-SGGNIDVT 385
A+++ F + + K +CI+ SGGN+D+T
Sbjct: 238 VAAVLSQHFQTVSPEVKNICIVLSGGNVDLT 268
>AK023169-1|BAB14442.1| 340|Homo sapiens protein ( Homo sapiens
cDNA FLJ13107 fis, clone NT2RP3002501, weakly similar to
THREONINE DEHYDRATASE CATABOLIC (EC 4.2.1.16). ).
Length = 340
Score = 54.0 bits (124), Expect = 6e-07
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Frame = -3
Query: 828 LSNYPNVDAVLIPXXXXXXXXXXXXXVKHLKPDTEIYGVETDKTCSMVESLRKNERI-HL 652
L+ P VDA+++P VK LKP ++Y E +S K + + +L
Sbjct: 171 LNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNL 230
Query: 651 DIDSTIAEGLAVNVVGTNTFYNIKGLVDKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXX 472
TIA+G+ + +G NT+ I+ LVD I V ED + A +
Sbjct: 231 YPPETIADGVK-SSIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVG 289
Query: 471 XXAIMAGLFPNLKGK-KVVCII-SGGNIDVT 385
A+++ F + + K +CI+ SGGN+D+T
Sbjct: 290 VAAVLSQHFQTVSPEVKNICIVLSGGNVDLT 320
>AF169974-1|AAG27081.1| 340|Homo sapiens serine racemase protein.
Length = 340
Score = 54.0 bits (124), Expect = 6e-07
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Frame = -3
Query: 828 LSNYPNVDAVLIPXXXXXXXXXXXXXVKHLKPDTEIYGVETDKTCSMVESLRKNERI-HL 652
L+ P VDA+++P VK LKP ++Y E +S K + + +L
Sbjct: 171 LNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNL 230
Query: 651 DIDSTIAEGLAVNVVGTNTFYNIKGLVDKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXX 472
TIA+G+ + +G NT+ I+ LVD I V ED + A +
Sbjct: 231 YPPETIADGVK-SSIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVG 289
Query: 471 XXAIMAGLFPNLKGK-KVVCII-SGGNIDVT 385
A+++ F + + K +CI+ SGGN+D+T
Sbjct: 290 VAAVLSQHFQTVSPEVKNICIVLSGGNVDLT 320
>AK223120-1|BAD96840.1| 340|Homo sapiens serine racemase variant
protein.
Length = 340
Score = 53.2 bits (122), Expect = 1e-06
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Frame = -3
Query: 828 LSNYPNVDAVLIPXXXXXXXXXXXXXVKHLKPDTEIYGVETDKTCSMVESLRKNERI-HL 652
L+ P VDA+++P VK LKP ++Y E S K + + +L
Sbjct: 171 LNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYRSKLKGKLMPNL 230
Query: 651 DIDSTIAEGLAVNVVGTNTFYNIKGLVDKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXX 472
TIA+G+ + +G NT+ I+ LVD I V ED + A +
Sbjct: 231 YPPETIADGVK-SSIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVG 289
Query: 471 XXAIMAGLFPNLKGK-KVVCII-SGGNIDVT 385
A+++ F + + K +CI+ SGGN+D+T
Sbjct: 290 VAAVLSQHFQTVSPEVKNICIVLSGGNVDLT 320
>AY358101-1|AAQ88468.1| 85|Homo sapiens Wpep3002 protein.
Length = 85
Score = 31.1 bits (67), Expect = 5.2
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 528 WPEPPNLPLQPLFCLQDL 581
WPEPP PL PL CL L
Sbjct: 2 WPEPPLGPLSPLLCLLSL 19
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,256,033
Number of Sequences: 237096
Number of extensions: 3211367
Number of successful extensions: 6650
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6618
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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