Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11g19
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    27   0.97 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   1.7  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    26   3.0  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   3.0  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   3.9  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   5.2  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    24   9.0  

>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -2

Query: 172 NSDCLDEEEQGFGGWLRSTNGLETMKLFVIANSIVMLTTLAYPHMQNIIG 23
           N D    +    G    + NG+E+++  V+ +    LT+L++P ++N+ G
Sbjct: 46  NGDLYISDAGNSGITTLTVNGIESVQGDVVVSDGQYLTSLSFPSLKNVSG 95


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
 Frame = +2

Query: 11  IGYNPDDIL----HVRIGQSREHHNTVGNHEQLHRF*TICGSEPTS 136
           +GY  DD +    H        HH    NH+ +H++   C  E  S
Sbjct: 519 MGYTNDDHVSQHEHTHENSQEHHHEHNHNHDHIHKYNEKCDHESIS 564


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 244 IKGSHKGSAIKVLDKSLETVDKPTNSD 164
           +KGS   + +K+  KSL  +D+ ++SD
Sbjct: 462 LKGSDVFTTLKITSKSLHNIDEHSDSD 488


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 373 KSQISYCSFSSLHRHSRELR*YPAAMFRW 287
           K   +YC FSSLH     L  Y   + RW
Sbjct: 209 KEYFAYCKFSSLHPGLGFLDQYTGILERW 237


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 122  IHKWFRNDEAVRDCQQYCDAHDFGLSSHA 36
            IH+  + D  + D    C   DFG+S H+
Sbjct: 952  IHRDLKADNLLIDFDGVCKISDFGISKHS 980


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 235 SHKGSAIKVLDKSLETVDKPTNS 167
           ++K  A+ ++ K L TVD  TNS
Sbjct: 119 NNKTKALSIIQKLLSTVDSSTNS 141


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 239 FDMFVPRHSL-ALSLLGPPEHSSW 307
           F  F P +S+ +L L+ PPE+ SW
Sbjct: 202 FPKFNPENSVTSLDLVEPPENYSW 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,537
Number of Sequences: 5004
Number of extensions: 34251
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)