Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11g17
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.9  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          24   1.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.3  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   7.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   7.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   7.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +3

Query: 621 PSTSQDTRSVENLAALYHHQPTLVHLPVSITEHYFRLSSSTSYRSAFVNHR 773
           P  S ++ +V+ L   + H  ++++  VSI  H    ++    R   +NH+
Sbjct: 446 PGVSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQYRLNHK 496


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +3

Query: 621 PSTSQDTRSVENLAALYHHQPTLVHLPVSITEHYFRLSSSTSYRSAFVNHR 773
           P  S ++ +V+ L   + H  ++++  VSI  H    ++    R   +NH+
Sbjct: 446 PGVSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQYRLNHK 496


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +3

Query: 621 PSTSQDTRSVENLAALYHHQPTLVHLPVSITEHYFRLSSSTSYRSAFVNHR 773
           P  S ++ +V+ L   + H  ++++  VSI  H    ++    R   +NH+
Sbjct: 72  PGVSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQYRLNHK 122


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 728 ALLIHFLPVSFRKSSRCLVR 787
           ++ + FLPV   + SRC VR
Sbjct: 3   SVFVAFLPVKSFRESRCSVR 22


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 137 LLPHQTDGHWASRWGSTSVISVT 205
           LL   T  +  +RW +TSVI+ T
Sbjct: 768 LLQCATSNYSTTRWPATSVITTT 790


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 618 QMCHRNIYINIENVASTIQAYC 553
           ++ ++N  INIE +   +  YC
Sbjct: 103 KLYYKNYIINIEQIPVPVPIYC 124


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 618 QMCHRNIYINIENVASTIQAYC 553
           ++ ++N  INIE +   +  YC
Sbjct: 344 KLYYKNYIINIEQIPVPVPIYC 365


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 315 YYRTET*KSCLKVGGGIY 368
           YY T    +CL  GG  Y
Sbjct: 126 YYTTNESHACLSTGGSCY 143


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 208 NDLLPIYNILE 240
           NDLL  YN+LE
Sbjct: 29  NDLLDTYNVLE 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,734
Number of Sequences: 438
Number of extensions: 5160
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)