Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11g11
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 47 3e-06
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 31 0.14
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 30 0.25
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 27 1.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 1.8
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.1
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 26 5.4
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 5.4
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 7.1
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 25 9.4
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 25 9.4
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 25 9.4
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 46.8 bits (106), Expect = 3e-06
Identities = 28/87 (32%), Positives = 42/87 (48%)
Frame = -2
Query: 274 TENLNESDIAIVQTNEQFLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPVA 95
TE ++ + P+T + I P+ +T C H YE++ IL+L+ CPV
Sbjct: 160 TEEQEADEVMVYSATFDNRCPLTLQPIVHPILSTACNHFYEKDAILSLL--NPTCVCPVV 217
Query: 94 GCANPESIQENHLLEDEELRFRLSLSQ 14
GC +Q + L EDE L RL +Q
Sbjct: 218 GC--EARLQRSLLKEDEILERRLRRAQ 242
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 31.1 bits (67), Expect = 0.14
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = -2
Query: 334 MQELKTRYESGLQSVSSSGLTENLNESDIAIVQTNEQFLDPITKKHISDPVKNTMCGHV- 158
+ ++K+R + + +N ++DI T+ P++ IS PV++ C H+
Sbjct: 267 VDQIKSRKAESKEKIIERIKNDN-QDADIIATSTDISLKCPLSFSRISLPVRSVFCKHIQ 325
Query: 157 -YERETILNLIRRKHRIRCPVAGCANPESIQENHLLED 47
++ L + ++ CPV CA+ IQ + L+ D
Sbjct: 326 CFDASAFLEMNKQTPSWMCPV--CAS--HIQFSDLIID 359
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 30.3 bits (65), Expect = 0.25
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = -2
Query: 421 SNINTLQERFEDGLKTLSQNRINPNSHRYMQELKTRYESGLQSVSS---SGLTENLNESD 251
SN+ TLQ R+ L L + + R + KT Y G + S + +N
Sbjct: 338 SNLITLQSRYSQALSELETTKRAFAALRKEKSKKTNYSVGAYNEDRNVLSNMLDNERREK 397
Query: 250 IAIVQTNEQFLDPITKKHISDPVKNT 173
A++Q E ++KK + P KNT
Sbjct: 398 EALLQELESLRVQLSKK-VPMPAKNT 422
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 277 LTENLNESDIAIVQTNEQFLDPITKKHISDPVKNTMCGHVYERETILNL 131
L E ++ S+++++ NE++ I +KH S P +YE L L
Sbjct: 125 LLEAMDNSNVSLLPENEKYRAVILRKHTSQP-NEPFSPEIYEAVHALTL 172
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 342 WLLGLILFCERVFRPSSNL 398
WL GL FC RVFR S+L
Sbjct: 733 WLQGLASFCGRVFRRYSSL 751
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 4.1
Identities = 30/106 (28%), Positives = 43/106 (40%)
Frame = -2
Query: 418 NINTLQERFEDGLKTLSQNRINPNSHRYMQELKTRYESGLQSVSSSGLTENLNESDIAIV 239
N N E+ E L S + +S K+R S ++ T+ L E+ I
Sbjct: 21 NNNLDDEKMEVLLIPQSNSTTFASSDATQMYKKSRISSNSENKKQIPDTKTLLETFQKIK 80
Query: 238 QTNEQFLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCP 101
+T E PI + + P T CGH Y E +LN + K CP
Sbjct: 81 KTLEC---PICTEALQRPF-TTHCGHTYCYECLLNWL--KESKSCP 120
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -2
Query: 373 LSQNRINPNSHRYMQELKTRYESGLQSVSSSGLTENLNESDI 248
+S+N+ N +S + Q+ S LQS+S++ L EN+ + I
Sbjct: 406 ISRNQSNLSSFQQQQQF-----SALQSISNNALNENIEQPPI 442
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 430 TNISNINTLQERFEDGLKT 374
T +SN+N ++E +DGLKT
Sbjct: 175 TILSNMNAVEETVKDGLKT 193
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 339 LWLLGLILFCERVFRPSSNLSWSVFMFDMLV 431
+W LG+ LFC R N S +FD +V
Sbjct: 336 VWALGVTLFCLLFGRCPFNASMEYELFDKIV 366
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 25.0 bits (52), Expect = 9.4
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = -2
Query: 364 NRINPNSHRYMQELKTRYESGLQSVSSSGLTENLNESDIAIVQTNEQFLDPITKKHISDP 185
N I Y+Q + E+ ++ +S S +EN + + ++ IT I++P
Sbjct: 327 NEIKSRKRLYVQNCQNGIEAVIEKLSQSQQSEN----PFIAHELKQTSVNEITAHVINEP 382
Query: 184 --VKNTMCGHVYERETILNLIR-RKHRIRCPV 98
+K T + + NL++ RKHR+R V
Sbjct: 383 ASLKLTTISTIL-HAPLQNLLKPRKHRLRVQV 413
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 9.4
Identities = 22/100 (22%), Positives = 39/100 (39%)
Frame = -2
Query: 415 INTLQERFEDGLKTLSQNRINPNSHRYMQELKTRYESGLQSVSSSGLTENLNESDIAIVQ 236
+N +G KT S + R + KT ESG + + ++ + D+++ +
Sbjct: 519 LNLSSSEISNGKKT-STPLVKVCGTRSLLAAKTIVESGGDLIGLIFVEKSKRKVDLSVAK 577
Query: 235 TNEQFLDPITKKHISDPVKNTMCGHVYERETILNLIRRKH 116
F+ +KHIS K + G + NL H
Sbjct: 578 EISHFVHTTNRKHISP--KKAVTGQSWFDHQYENLASSPH 615
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -2
Query: 439 KADTNISNINTLQERFEDGLKTLSQNRINPNSHRYMQELKTRY 311
++DT+I +I Q+ D ++ + NPN + Y ++Y
Sbjct: 220 RSDTSIESITASQQPTWDENVVITSSPFNPNRNAYSYGANSQY 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,892
Number of Sequences: 5004
Number of extensions: 50295
Number of successful extensions: 166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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