Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11g10
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 28 1.9
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 28 1.9
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.5
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 27 3.2
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 27 4.3
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 27 4.3
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 26 7.5
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 26 7.5
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 7.5
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 9.9
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 9.9
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 25 9.9
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 9.9
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 25 9.9
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = -3
Query: 731 AYHGNRLENFYTI-LNFGLQQHLNKNTSL--GNGVYLSPELS 615
AYHG+R +N+Y + +FG ++ L + + G G+YL +++
Sbjct: 100 AYHGHRPKNYYRLNPHFGNEEDLKELSDALHGKGMYLMVDVA 141
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 532 SHKATQDK*PPIQLAPHPKP 591
SHKAT D PP + P P P
Sbjct: 313 SHKATSDAVPPAEAKPEPVP 332
>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 255
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 503 N*SLRVHQPLRTRLHKISDLR-YNSPPIRSLHDCEVLSHL 619
N R +P++ +IS LR +N PPI+ H+ +L +
Sbjct: 27 NPMFRSLRPIQKSFSEISILRVFNKPPIKKFHNSNILKDI 66
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 752 KNHNVFYAYHGNRLENFYTILNFGLQQHLNKNTSLGNGVYLSPELSATIPHSH 594
K HN +++GNR ++I+N GL +L K+ + L+ + AT + H
Sbjct: 339 KRHNSSQSFYGNRSTTNFSIINSGL--YLKKDAAKN---LLAKQFDATYSYYH 386
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 499 W*LIPSGASTTSHKATQDK*PPIQLAPHPK 588
W +PSG +T S +A QDK +L H K
Sbjct: 523 WNNVPSGDNTLSTEALQDKKKSEELTAHSK 552
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 617 LVLATGILHYPAKYSCSNAVVSQN*ESYKSSPNDFRDTHKIHYDFWTVLSTLVRQ*IC 790
++L +LHY +A+ S+ + S N +R HK+H D ++ L R +C
Sbjct: 19 ILLKKALLHY------KDAIKSEREGNLGESLNKYRLAHKVHEDVESIYRRLERLQLC 70
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 26.6 bits (56), Expect = 4.3
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 725 HGNRLENFYTILNFGLQQHLNKNTSLGNGV-YLSPELSATIPHSHGGFGWGASCIGGHLS 549
HG ++ ++ N L K +G V +L+ + IPH GG G G C+ HL+
Sbjct: 735 HGGQV--YFDGANMNAMVGLCKAGDIGADVCHLNLHKTFCIPHGGGGPGVGPICVKKHLA 792
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 587 FGWGASCIGGHL-SCVALCEVVDAPEGINYQKPVSNEGDGLY 465
F W HL SCV C+++ + NY+ P+ ++ LY
Sbjct: 1106 FDWDFGNKDDHLGSCVIDCKLLQQQQQTNYEIPLDSKQGVLY 1147
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.8 bits (54), Expect = 7.5
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 533 RTRLHKISDLRYNSPPIRSLHDCEVLSHLVLATGILHYPAKYSCSNAVVSQN*ESYKSSP 712
RT H I L N S+H C++ + T YP+K + SN VS + S+ S
Sbjct: 338 RTITHFIKKLVCNEC---SMHPCDIEEIIAWRTLNSLYPSKATLSNNFVSTSDLSFWSRE 394
Query: 713 NDFRDTHKIH-YDFWTVLSTL 772
R K + + FW S L
Sbjct: 395 YFVRSKGKSYLHCFWCSASWL 415
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 154 LGYNSTIESWTWNWMPLIH*LDWIA 80
L Y S +E T+N P+IH L +IA
Sbjct: 6 LDYLSALEDLTFNSKPIIHTLTYIA 30
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 9.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 344 MRVVSRKPTDNGFSLSH 394
MR+ S P+ NGFS++H
Sbjct: 457 MRLSSEPPSSNGFSIAH 473
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 509 SLRVHQPLRTRLHKISDLRYNSPPIRSLHDCE 604
S+ +H RT H R+N I SL +CE
Sbjct: 165 SMDIHSRYRTEAHSDVTARFNERFILSLGNCE 196
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 806 KLSVLNKSTVELKWKELSKNHNVFYAYHGNRLENF 702
++S+ K + KWK S +NVF A + E+F
Sbjct: 138 RISIEEKLEIFSKWKYESPGNNVFEAISPHERESF 172
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 67 IKYVRQSNPVNESKASNSKSMILLYCY-TLVLARAMSI 177
+KY++ + ESK SN IL Y + VLA A S+
Sbjct: 877 LKYIQHRDFTKESKDSNDTESILKNSYSSYVLALAYSV 914
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +2
Query: 635 ILHYPAKYSCSNAVVSQN*ESYKSSPNDFRDTHKIHYDFWTVLST 769
I H + SC A V ESY+ SP + YD W V T
Sbjct: 534 IYHAALEASCEIAQVEGTYESYEGSP---ASQGILQYDMWNVNPT 575
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,607,708
Number of Sequences: 5004
Number of extensions: 79707
Number of successful extensions: 222
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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