Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11g09
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...   174   1e-44
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...    29   0.53 
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.1  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    27   2.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.8  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.7  

>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score =  174 bits (424), Expect = 1e-44
 Identities = 75/196 (38%), Positives = 131/196 (66%), Gaps = 6/196 (3%)
 Frame = -1

Query: 722 SMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQL---GKAKIGGSFELVNSEGKLVKSA 552
           S+ A ++          Y + EK++ L+R+  K L   G+ ++GG+F L++  G  V   
Sbjct: 55  SIRALLLAAATSVGLYAYFQHEKKKVLERQNDKVLATIGRPQLGGAFSLIDHHGNRVTDN 114

Query: 551 DFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELV 372
           DF GK+ LIYFGFT CPDICPDEL+K++  +D+ +       + P+FI+ DP RD P+ +
Sbjct: 115 DFKGKFSLIYFGFTRCPDICPDELDKMSAAIDIVNNVVGD-VVYPIFITCDPARDPPQEM 173

Query: 371 GKYCKEFTPRLLGLTGTKEQVQQACKSYRVYFSAGPQDVD---NDYIVDHTIIVYLVNPD 201
            +Y ++F P+++GLTG+ E+++  CK +RVYFS  P+++D   +DY+VDH++  YL++P+
Sbjct: 174 AEYLEDFNPKIVGLTGSYEEIKDICKKFRVYFST-PKNIDPKKDDYLVDHSVFFYLMDPE 232

Query: 200 GEFVDYYGQNRNAKEI 153
           G+F++ +G+N  ++++
Sbjct: 233 GKFIEVFGRNSTSEDL 248


>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 587 LVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAE 465
           +VN   + +K AD+ GKW+ + F       +CP E+   +E
Sbjct: 17  VVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSE 57


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 422 QPVFISVDPQRDTPELVGKYCKEFTPRLLGLTGTKEQVQQACKSYRVYFSAGPQDVDN 249
           QP FI +D   +  E + K  KE++ + L +T TKE  +  C +   +  A  ++ DN
Sbjct: 232 QPGFIQLDIASNLQE-IKKGTKEYSLKSLEMTTTKESNETLCSNDSKHRIARLKNEDN 288


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -1

Query: 548 FLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSP 429
           FLG+  +I  G T C D  P E  K   V  +   TPS P
Sbjct: 152 FLGQVQVIIHGKTECYDCNPKEPPKTYPVCTIR-STPSQP 190


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 452 HDKTPSSPPLQPVFISVDPQRDTPELVG 369
           H  TPSSP +   F+SV P    P+  G
Sbjct: 120 HVATPSSPTISNSFVSVSPLLKRPQQKG 147


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +1

Query: 295 LQACWTCSFVPVKPSSLGVNSLQYLPTNSGVSL*GSTDMKTGCKGGDDGVLSCKSTTSAN 474
           LQ   T   +P+     G++S    P+ S  S+  S+++     GG+ G+++   + S N
Sbjct: 165 LQMNTTLDDIPILLRRPGLSSYTPGPSTSRRSISSSSNL-----GGNPGLIANNPSASKN 219

Query: 475 FSNSSGQIS 501
           F+ +SG  S
Sbjct: 220 FAFTSGSSS 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,632
Number of Sequences: 5004
Number of extensions: 64307
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)