Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11g09
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323... 192 3e-49
09_03_0087 - 12237226-12237346,12237423-12237555,12237641-122377... 138 6e-33
05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760 32 0.56
04_04_1095 - 30839573-30839769,30839817-30839964,30840421-308409... 31 0.97
01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897 30 2.2
08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202 29 3.9
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 29 5.2
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378... 28 6.9
09_06_0205 - 21567467-21567655,21567791-21567876,21567965-215680... 28 9.1
04_01_0286 + 3800617-3801720,3801945-3801989,3802063-3802203,380... 28 9.1
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 28 9.1
>02_01_0449 -
3229260-3229365,3230264-3230396,3230536-3230625,
3231097-3231309,3232317-3232407,3232519-3232707,
3232810-3232920,3233018-3233110
Length = 341
Score = 192 bits (467), Expect = 3e-49
Identities = 90/209 (43%), Positives = 134/209 (64%), Gaps = 5/209 (2%)
Frame = -1
Query: 728 WKSMAATVVVGGGLTAFMMYVKKEKQEALDR-----ERKKQLGKAKIGGSFELVNSEGKL 564
W S +V GGG+ + KK E L +++ +G A IGG F L+N +GK
Sbjct: 135 WLSFLLLLVTGGGIIVYYDKEKKRHIEELKNRTSAVKQEPSVGTAAIGGPFNLLNHDGKP 194
Query: 563 VKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDT 384
V DF GKW L+YFGFTHCPDICPDEL+K+A +D K + + PVFI+VDP+RDT
Sbjct: 195 VTQKDFFGKWTLLYFGFTHCPDICPDELQKMALAID-KIKEKAKMEVVPVFITVDPERDT 253
Query: 383 PELVGKYCKEFTPRLLGLTGTKEQVQQACKSYRVYFSAGPQDVDNDYIVDHTIIVYLVNP 204
E V Y EF P L+GLTGT +++++ ++YRVY+ ++ +DY+VDH+I++YL+NP
Sbjct: 254 VEQVRDYVNEFHPNLIGLTGTTDEIRKVARAYRVYYMK-TEEEGSDYLVDHSIVMYLMNP 312
Query: 203 DGEFVDYYGQNRNAKEIYESMLVNIKKYE 117
EFV +YG+N +A + + ++ +K ++
Sbjct: 313 KMEFVKFYGKNYDADSLADGIIKELKGHQ 341
>09_03_0087 -
12237226-12237346,12237423-12237555,12237641-12237730,
12238992-12239198,12239738-12239813,12240019-12240148,
12241024-12241121
Length = 284
Score = 138 bits (333), Expect = 6e-33
Identities = 76/210 (36%), Positives = 124/210 (59%), Gaps = 5/210 (2%)
Frame = -1
Query: 713 ATVVVGGGLTAFMMYVKKEK---QEALDRERKKQL--GKAKIGGSFELVNSEGKLVKSAD 549
+ ++V GL F+ Y +++ QEA K+ + IGG F+L ++E K V +
Sbjct: 78 SALLVFAGLVTFVHYNDEKRAVTQEAQQTSVPKRCTTNRPAIGGPFKLYDTENKEVTESK 137
Query: 548 FLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVG 369
G W L+YFG+T CPDI P E++K+A+VV L + + + P+FI++DPQRD+P +
Sbjct: 138 LRGNWTLMYFGYTSCPDIGPAEVQKMADVVKLLE-SKYGTKITPLFITIDPQRDSPAQLK 196
Query: 368 KYCKEFTPRLLGLTGTKEQVQQACKSYRVYFSAGPQDVDNDYIVDHTIIVYLVNPDGEFV 189
Y EF PR++GLTG+ V+Q + YRV+F D+ DY+V+ + +YL++P E
Sbjct: 197 AYLSEFDPRIIGLTGSINAVRQIAQEYRVFFKK-VDDIGQDYLVESSHNMYLLDPCLETA 255
Query: 188 DYYGQNRNAKEIYESMLVNIKKYEAAKKST 99
+G A ++ E++ + I+K A+K ST
Sbjct: 256 RCFGAEYEASDLAEAITLEIQK--ASKSST 283
>05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760
Length = 289
Score = 31.9 bits (69), Expect = 0.56
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 571 PSEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTT 705
PS+ TSS + P + S S S +CF+ + PPPTT
Sbjct: 130 PSQCTSSAMAPALSPASSSVTSSSGDACFAAAATTTTTMYPPPTT 174
>04_04_1095 -
30839573-30839769,30839817-30839964,30840421-30840903,
30841419-30841910,30842267-30842362
Length = 471
Score = 31.1 bits (67), Expect = 0.97
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Frame = -1
Query: 716 AATVVVGGGLTAFMMYVKKEKQ-EALDRERKKQLGKAKIGGSFE---LVNSEGKLVKSAD 549
A +V G+ A+ K+ + E +D R++ ++ G E +++++G +D
Sbjct: 142 AVKLVEEYGVDAYPFGAKRRSELEGMDDARRQGGNLLQLLGCKEREYVISADGIKTPISD 201
Query: 548 FLGKWMLIYFGFTHCPDICPDELEKLAEVVD-LHDKTPSSPPLQPVFISVD 399
GK + +YFG CP C ++L E D L P + Q +FIS+D
Sbjct: 202 LNGKTIGLYFGAHWCPP-CRAFTKQLREAYDELKALRPGN--FQVIFISMD 249
>01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897
Length = 553
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +1
Query: 550 SALLTNLPSEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTTT 708
SAL +P ++++ + A S L+ ++ +C +FL++ + PPP+T+
Sbjct: 81 SALRARIPPAVSTAR--SVLAASSNVNLTNAATNCLTFLSFSTHRLSPPPSTS 131
>08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202
Length = 288
Score = 29.1 bits (62), Expect = 3.9
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Frame = -1
Query: 617 GKAKIGGSFELVNSEGKLVKSADFLGK-WML---IYFGFTHCPDICPDELEKLAEVVDLH 450
G+A G E V E +L L + W+L Y P +E L +DL
Sbjct: 135 GRAPKGRKTEWVMHEFRLEPQPLHLKEDWVLCRVFYKTRQTIPSPSSEEAVTLPNELDL- 193
Query: 449 DKTPSSPPLQPVFISVD-PQRDTPELVGKY 363
TPS PPL +I+ D TP +VG Y
Sbjct: 194 PATPSLPPLIDAYIAFDSAPTTTPSMVGSY 223
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = -1
Query: 338 LGLTGTKEQVQQACKSYRVYFSAGPQDVDNDYIVDHTI---IVYLVNPDGEFVDYYGQNR 168
+ +T T+ V+ ACKS + + P +VDN ++ + + L+ +D+ Q++
Sbjct: 1385 ISITTTQSAVRCACKSLQSAVDSLPPEVDNSGVLFPPLSGQVELLLTITRILLDHAKQSK 1444
Query: 167 NAKEIYESMLVNIKKYEAAKKSTWF 93
+++ +Y ++V + K A S F
Sbjct: 1445 SSRHLY-PVIVLLMKTSGASTSFLF 1468
>03_04_0013 +
16436438-16436536,16437257-16437742,16437791-16437826,
16437835-16438323,16438951-16439622
Length = 593
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = -1
Query: 653 QEALDRERKKQLGKAKIGGSFELV-NSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELE 477
++A + + L + G + V +G V ++ +GK +L+YF CP C L
Sbjct: 340 EKAKAKAESQTLESLLVTGDLDFVLGKDGAKVPVSELVGKTVLLYFSAKWCPP-CRAFLP 398
Query: 476 KLAEVVDLHDKTPSSPPLQPVFISVDPQRDT 384
KL V + + + VFIS D ++ +
Sbjct: 399 KL--VNEYNKIKEKHNDFEIVFISSDREQSS 427
>09_06_0205 -
21567467-21567655,21567791-21567876,21567965-21568037,
21568267-21568326,21568887-21568935,21569328-21569431,
21569587-21569640,21569719-21569763,21569817-21569879,
21570415-21570615,21570620-21570797,21570900-21570993,
21571075-21572478,21572560-21572604,21572710-21572788,
21573424-21573589,21573679-21573771,21573872-21573929,
21574063-21574120,21574210-21574367,21575130-21575177,
21575269-21575320,21575404-21575529
Length = 1160
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 426 FATSLHISRPSEGHTRISWQVL*GVYTKTARFNWNK 319
FA S HISRP++ WQ + + +T W K
Sbjct: 237 FALSGHISRPTDVFCNKDWQTVMYFFERTITDYWKK 272
>04_01_0286 +
3800617-3801720,3801945-3801989,3802063-3802203,
3802368-3802397,3802519-3803025
Length = 608
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 374 VGKYCKEFTPRLLGLTGTKEQVQQACKSYRVYFSAG 267
+G YC E P +G+++ + C S VYFS G
Sbjct: 170 LGLYCMELDP-----SGSRQYYDKLCNSSTVYFSTG 200
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 488 DELEKL-AEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKYCKEF 351
D+ + L A+ L K P + VFI V P D P ++ C++F
Sbjct: 472 DDCDTLPADTWSLISKVVDRAPRRVVFILVSPNLDLPHIILSRCQKF 518
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,524,767
Number of Sequences: 37544
Number of extensions: 411405
Number of successful extensions: 1012
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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