Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11g09
(746 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58761-6|AAB00716.1| 312|Caenorhabditis elegans Hypothetical pr... 233 1e-61
U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical pr... 31 0.66
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 31 0.66
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 31 0.66
Z32683-2|CAA83619.1| 226|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z37092-6|CAE46667.1| 334|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z37092-5|CAA85456.1| 336|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z78015-4|CAB01436.2| 149|Caenorhabditis elegans Hypothetical pr... 29 2.6
U61958-3|AAB03180.2| 149|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF098987-4|AAC67429.1| 496|Caenorhabditis elegans Hypothetical ... 29 2.6
Z81526-5|CAB04262.1| 983|Caenorhabditis elegans Hypothetical pr... 29 3.5
U40802-5|AAK19011.2| 339|Caenorhabditis elegans Hypothetical pr... 29 4.6
AL021470-3|CAA16291.2| 414|Caenorhabditis elegans Hypothetical ... 28 6.1
>U58761-6|AAB00716.1| 312|Caenorhabditis elegans Hypothetical
protein C01F1.2 protein.
Length = 312
Score = 233 bits (570), Expect = 1e-61
Identities = 101/212 (47%), Positives = 151/212 (71%), Gaps = 2/212 (0%)
Frame = -1
Query: 728 WKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVKSAD 549
WK++ T VGG A + Y+KK + + ++ RK+ GKA+IGG +EL+N++GK+ S +
Sbjct: 96 WKTVLGTFAVGGTCLAALFYIKKIRLDEREKHRKQTAGKARIGGEWELMNTDGKMEGSQE 155
Query: 548 FLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVG 369
G W+L+YFGFT+CPDICPDE+EK+ +VV++ + + P+ PVFISVDP+RD+ V
Sbjct: 156 LRGNWLLMYFGFTNCPDICPDEIEKMVKVVEIIEAKKDATPIVPVFISVDPERDSVARVK 215
Query: 368 KYCKEFTPRLLGLTGTKEQVQQACKSYRVYFSAGPQ--DVDNDYIVDHTIIVYLVNPDGE 195
+YC EF+ +L G TGT EQV + K++RVY S GP+ ++DYIVDHT+I+YL++P G+
Sbjct: 216 EYCSEFSNKLRGFTGTTEQVNKVAKTFRVYHSQGPRTNKQEDDYIVDHTVIMYLIDPSGQ 275
Query: 194 FVDYYGQNRNAKEIYESMLVNIKKYEAAKKST 99
F DYYGQNR A+EI + + + KY+A + +
Sbjct: 276 FHDYYGQNRKAEEIANVIEMKVLKYQAQNRKS 307
>U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical
protein C09F5.3 protein.
Length = 359
Score = 31.5 bits (68), Expect = 0.66
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = -1
Query: 530 LIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKYCKEF 351
LI +G C P +L + V HD+ PP P+ P + TP+ C
Sbjct: 235 LIMYGCALCATSYPSQLHLITHVQMSHDQETFYPPSLPIPTPPSP-KSTPKQRVLQCSVC 293
Query: 350 TPRLLGLTGTKE-QVQQACK 294
+LG G E ++++ CK
Sbjct: 294 DESVLGEDGLDEHRLRKHCK 313
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 260 DVDNDYIVDHTIIVYLVNPDGEFVDYYGQNRNAKEIYESM-LVNIKKYEAAK 108
+ NDY VD I+ V G F++ Y + + EI S+ V +K+ E AK
Sbjct: 12251 EAKNDYGVDKCTILLDVRDSGSFIEDYSEIHRSAEIQNSVGDVQVKEGETAK 12302
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 260 DVDNDYIVDHTIIVYLVNPDGEFVDYYGQNRNAKEIYESM-LVNIKKYEAAK 108
+ NDY VD I+ V G F++ Y + + EI S+ V +K+ E AK
Sbjct: 12251 EAKNDYGVDKCTILLDVRDSGSFIEDYSEIHRSAEIQNSVGDVQVKEGETAK 12302
>Z32683-2|CAA83619.1| 226|Caenorhabditis elegans Hypothetical
protein R07E5.2 protein.
Length = 226
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = -1
Query: 587 LVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDEL 480
+V+ + K++ D+ GKW++++F +CP E+
Sbjct: 47 VVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEI 82
>Z37092-6|CAE46667.1| 334|Caenorhabditis elegans Hypothetical
protein F44F4.5b protein.
Length = 334
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +2
Query: 89 FKTMLISLQLHIS*CSLTLIHKFLWHSYSV 178
+ TM+++L+LH S +++ H +W +Y+V
Sbjct: 257 YSTMVLTLRLHKSMIPISIYHNMVWWAYTV 286
>Z37092-5|CAA85456.1| 336|Caenorhabditis elegans Hypothetical
protein F44F4.5a protein.
Length = 336
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +2
Query: 89 FKTMLISLQLHIS*CSLTLIHKFLWHSYSV 178
+ TM+++L+LH S +++ H +W +Y+V
Sbjct: 259 YSTMVLTLRLHKSMIPISIYHNMVWWAYTV 288
>Z78015-4|CAB01436.2| 149|Caenorhabditis elegans Hypothetical
protein R02D5.7 protein.
Length = 149
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 518 GFTHCPDICPDELEKLAEVVD 456
G+ +C D+ PD+L+K+AE D
Sbjct: 126 GYENCQDMTPDQLKKIAEQAD 146
>U61958-3|AAB03180.2| 149|Caenorhabditis elegans Hypothetical
protein C25A8.2 protein.
Length = 149
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 518 GFTHCPDICPDELEKLAEVVD 456
G+ +C D+ PD+L+K+AE D
Sbjct: 126 GYENCQDMTPDQLKKIAEQAD 146
>AF098987-4|AAC67429.1| 496|Caenorhabditis elegans Hypothetical
protein F40H3.1a protein.
Length = 496
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +1
Query: 577 EFTSSKLPPIFAFPSCFFL-SRSSASCFSFL---TYIIKAVKPPPTTTVAA 717
E T +LP + F +C F+ S+SSA C + L TYI PP + T +A
Sbjct: 165 ESTPKELPTVTKFTNCTFIRSQSSARCKAILPDTTYI--CTLPPVSATFSA 213
>Z81526-5|CAB04262.1| 983|Caenorhabditis elegans Hypothetical
protein F33H2.1 protein.
Length = 983
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 400 STDMKTGCKGGDDGVLSCKSTTSANFSNS 486
ST+ KT +GG DGV +C + +SAN S
Sbjct: 477 STEAKTPARGGQDGVKTC-TISSANLFTS 504
>U40802-5|AAK19011.2| 339|Caenorhabditis elegans Hypothetical
protein ZC477.5 protein.
Length = 339
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 530 LIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPV 414
L+ +G +CP + + L+K V + H PP QP+
Sbjct: 280 LLAYGRQNCPGVIEEILKKPVHVPNDHSTQQPQPPEQPI 318
>AL021470-3|CAA16291.2| 414|Caenorhabditis elegans Hypothetical
protein Y17D7A.1 protein.
Length = 414
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = -1
Query: 590 ELVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPV 414
E+V E L+ D L K I + P L+KLAE + D S P QPV
Sbjct: 127 EVVRCEKDLIDCTDLLRKAGRILKEGSESPLYTKSNLQKLAEALQKIDICHDSSPSQPV 185
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,951,619
Number of Sequences: 27780
Number of extensions: 365157
Number of successful extensions: 1058
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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